Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:43 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ERSSA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 563/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ERSSA 1.6.0 Zixuan Shao
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: ERSSA |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings ERSSA_1.6.0.tar.gz |
StartedAt: 2020-10-17 01:10:34 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 01:15:30 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 295.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ERSSA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings ERSSA_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/ERSSA.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ERSSA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ERSSA’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ERSSA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed erssa_deseq2_parallel 51.000 0.256 51.273 erssa_deseq2 45.460 0.112 45.609 erssa 14.343 0.100 14.456 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ERSSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL ERSSA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘ERSSA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ERSSA)
ERSSA.Rcheck/ERSSA-Ex.timings
name | user | system | elapsed | |
comb_gen | 0.011 | 0.000 | 0.011 | |
count_filter | 0.006 | 0.000 | 0.005 | |
erssa | 14.343 | 0.100 | 14.456 | |
erssa_deseq2 | 45.460 | 0.112 | 45.609 | |
erssa_deseq2_parallel | 51.000 | 0.256 | 51.273 | |
erssa_edger | 2.671 | 0.000 | 2.679 | |
erssa_edger_parallel | 3.249 | 0.004 | 3.253 | |
ggplot2_TPR_FPRPlot | 0.349 | 0.008 | 0.357 | |
ggplot2_dotplot | 0.388 | 0.004 | 0.392 | |
ggplot2_intersectPlot | 0.376 | 0.000 | 0.376 | |
ggplot2_marginPlot | 0.353 | 0.000 | 0.353 | |