Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:23 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CorMut PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 378/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CorMut 1.30.0 Zhenpeng Li
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
Package: CorMut |
Version: 1.30.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CorMut_1.30.0.tar.gz && rm -rf CorMut.buildbin-libdir && mkdir CorMut.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CorMut.buildbin-libdir CorMut_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CorMut_1.30.0.zip && rm CorMut_1.30.0.tar.gz CorMut_1.30.0.zip |
StartedAt: 2020-10-16 17:31:23 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 17:31:48 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 24.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CorMut_1.30.0.tar.gz && rm -rf CorMut.buildbin-libdir && mkdir CorMut.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CorMut.buildbin-libdir CorMut_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CorMut_1.30.0.zip && rm CorMut_1.30.0.tar.gz CorMut_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42870 100 42870 0 0 659k 0 --:--:-- --:--:-- --:--:-- 747k install for i386 * installing *source* package 'CorMut' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'seq_num.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'kaks.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'lod.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'q.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'ka.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'ks.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'mi.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'p.value.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'ckaks.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'method.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'positiveSite01.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'positiveSite02.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'state_1.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'statistic_1.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'state_2.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! Warning in .recursiveCallTest(body, fname) : the body of the generic function for 'statistic_2.CorMut' calls 'standardGeneric' to dispatch on a different name ("aslot")! ** help *** installing help indices converting help for package 'CorMut' finding HTML links ... done CorMut-package html JI-class html MI-class html biCkaksCodon-class html biCompare-class html biCompare-methods html ckaks-class html ckaksAA html ckaksCodon html filterSites-methods html jiAA html kaksAA-class html kaksAA html kaksCodon-class html kaksCodon html miAA html miCodon html plot-methods html seqFormat-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CorMut' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CorMut' as CorMut_1.30.0.zip * DONE (CorMut) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'CorMut' successfully unpacked and MD5 sums checked