Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:14 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CluMSID PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 315/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CluMSID 1.4.0 Tobias Depke
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: CluMSID |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CluMSID.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CluMSID_1.4.0.tar.gz |
StartedAt: 2020-10-16 23:46:21 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 23:50:17 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 236.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CluMSID.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CluMSID.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CluMSID_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/CluMSID.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CluMSID/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CluMSID’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CluMSID’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mergeMS2spectra 9.500 0.071 9.576 getSimilarities 5.604 0.030 5.640 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CluMSID.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CluMSID ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘CluMSID’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CluMSID)
CluMSID.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(CluMSID) > > test_check("CluMSID") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 16 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 20.313 0.532 20.847
CluMSID.Rcheck/CluMSID-Ex.timings
name | user | system | elapsed | |
Featurelist | 0.032 | 0.002 | 0.035 | |
HCplot | 0.397 | 0.049 | 0.447 | |
HCtbl | 0.020 | 0.002 | 0.021 | |
MDSplot | 0.648 | 0.019 | 0.669 | |
OPTICSplot | 0.042 | 0.004 | 0.046 | |
OPTICStbl | 0.040 | 0.004 | 0.045 | |
accessors | 0.096 | 0.005 | 0.101 | |
addAnnotations | 0.180 | 0.209 | 0.389 | |
as.MS2spectrum | 0.270 | 0.019 | 0.290 | |
cossim | 0.032 | 0.001 | 0.033 | |
distanceMatrix | 1.162 | 0.049 | 1.218 | |
extractMS2spectra | 2.444 | 0.070 | 2.524 | |
extractPseudospectra | 1.610 | 0.094 | 1.719 | |
findFragment | 0.046 | 0.001 | 0.048 | |
findNL | 0.037 | 0.002 | 0.040 | |
getSimilarities | 5.604 | 0.030 | 5.640 | |
getSpectrum | 0.082 | 0.004 | 0.085 | |
mergeMS2spectra | 9.500 | 0.071 | 9.576 | |
networkplot | 0.278 | 0.006 | 0.285 | |
specplot | 0.017 | 0.002 | 0.020 | |
splitPolarities | 2.037 | 0.031 | 2.070 | |
writeFeaturelist | 0.031 | 0.001 | 0.064 | |