Mark van de Wiel
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/CGHbase |
| Branch: RELEASE_3_11 |
| Last Commit: c05d75c |
| Last Changed Date: 2020-04-27 14:17:17 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:13 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CGHbase PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 264/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CGHbase 1.48.0 Mark van de Wiel
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: CGHbase |
| Version: 1.48.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CGHbase_1.48.0.tar.gz && rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CGHbase.buildbin-libdir CGHbase_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CGHbase_1.48.0.zip && rm CGHbase_1.48.0.tar.gz CGHbase_1.48.0.zip |
| StartedAt: 2020-10-16 17:00:59 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:01:42 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 43.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CGHbase_1.48.0.tar.gz && rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CGHbase.buildbin-libdir CGHbase_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CGHbase_1.48.0.zip && rm CGHbase_1.48.0.tar.gz CGHbase_1.48.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'CGHbase' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CGHbase'
finding HTML links ... done
CGHbase-package html
Wilting html
WiltingCalled html
WiltingNorm html
WiltingRaw html
WiltingRegions html
WiltingSeg html
avedist html
chromosomes html
class.cghCall html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:42: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:56: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:95: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:96: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:97: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:100: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:101: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:137: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghCall.Rd:143: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
class.cghRaw html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:25: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:30: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:62: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:63: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:64: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:67: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:68: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:82: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghRaw.Rd:88: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
class.cghRegions html
class.cghSeg html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:27: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:33: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:60: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:61: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:62: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:65: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:66: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:85: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0plo3/R.INSTALL8801fad457d/CGHbase/man/class.cghSeg.Rd:91: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
copynumber html
frequencyPlot html
frequencyPlotCalls html
make_cghRaw html
plot html
probloss html
regions html
summaryPlot html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CGHbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CGHbase' as CGHbase_1.48.0.zip
* DONE (CGHbase)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CGHbase' successfully unpacked and MD5 sums checked