Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:12 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CAMERA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 222/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CAMERA 1.44.0 Steffen Neumann
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: CAMERA |
Version: 1.44.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CAMERA_1.44.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.44.0.zip && rm CAMERA_1.44.0.tar.gz CAMERA_1.44.0.zip |
StartedAt: 2020-10-16 18:56:10 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 19:01:39 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 328.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CAMERA_1.44.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.44.0.zip && rm CAMERA_1.44.0.tar.gz CAMERA_1.44.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1802k 100 1802k 0 0 23.1M 0 --:--:-- --:--:-- --:--:-- 25.5M install for i386 * installing *source* package 'CAMERA' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fastMatch.c -o fastMatch.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/CAMERA.buildbin-libdir/00LOCK-CAMERA/00new/CAMERA/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' ** help *** installing help indices converting help for package 'CAMERA' finding HTML links ... done annotate-methods html annotateDiffreport html finding level-2 HTML links ... done calcCaS-methods html calcCiS-methods html calcIsotopes-methods html calcPC-methods html calcPC.hcs-methods html calcPC.lpc-methods html cleanParallel html combinexsAnnos html compoundLibraries html compoundQuantiles-class html compoundQuantiles html findAdducts-methods html findIsotopes-methods html findIsotopesWithValidation-methods html findKendrickMasses html findNeutralLoss html findNeutralLossSpecs html getAllPeakEICs-methods html getAtomCount-compoundQuantiles-method html getIsotopeCluster html getIsotopeProportion-compoundQuantiles-method html getPeaklist-methods html getReducedPeaklist-methods html getpspectra html groupCorr-methods html groupDen-methods html groupFWHM-methods html massWindowSizes html mm14 html plotEIC.xsAnnotate html plotPsSpectrum.xsAnnotate html psDist-methods html pspec2metfrag html ruleSet-class html xsAnnotate-class html xsAnnotate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' ** testing if installed package can be loaded from final location Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CAMERA' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fastMatch.c -o fastMatch.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' * MD5 sums packaged installation of 'CAMERA' as CAMERA_1.44.0.zip * DONE (CAMERA) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'CAMERA' successfully unpacked and MD5 sums checked