Vincent Carey
| Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/dressCheck |
| Branch: RELEASE_3_10 |
| Last Commit: bd7a7d3 |
| Last Changed Date: 2019-10-29 13:29:35 -0400 (Tue, 29 Oct 2019) |
| Back to Build/check report for BioC 3.10 experimental data |
This page was generated on 2020-04-14 17:46:18 -0400 (Tue, 14 Apr 2020).
| Package 99/384 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| dressCheck 0.24.0 Vincent Carey
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: dressCheck |
| Version: 0.24.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:dressCheck.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings dressCheck_0.24.0.tar.gz |
| StartedAt: 2020-04-14 13:00:37 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 13:01:15 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 38.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: dressCheck.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:dressCheck.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings dressCheck_0.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/dressCheck.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dressCheck/DESCRIPTION’ ... OK
* this is package ‘dressCheck’ version ‘0.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dressCheck’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 65.8Mb
sub-directories of 1Mb or more:
data 54.4Mb
sampleRemap 11.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: DrAsGiven.Rd:69-71: Dropping empty section \details
prepare_Rd: DrAsGiven.Rd:72-74: Dropping empty section \source
prepare_Rd: DrAsGiven.Rd:75-77: Dropping empty section \references
prepare_Rd: E2F3sig.probes.Rd:16-18: Dropping empty section \details
prepare_Rd: E2F3sig.probes.Rd:19-21: Dropping empty section \source
prepare_Rd: E2F3sig.probes.Rd:22-24: Dropping empty section \references
prepare_Rd: Src.probes.Rd:17-19: Dropping empty section \details
prepare_Rd: Src.probes.Rd:20-22: Dropping empty section \source
prepare_Rd: Src.probes.Rd:23-25: Dropping empty section \references
prepare_Rd: c119.Rd:97-99: Dropping empty section \source
prepare_Rd: c119.Rd:100-102: Dropping empty section \references
prepare_Rd: corrp116.Rd:71-73: Dropping empty section \details
prepare_Rd: corrp116.Rd:74-76: Dropping empty section \source
prepare_Rd: corrp116.Rd:77-79: Dropping empty section \references
prepare_Rd: e2f3Wts.Rd:19-21: Dropping empty section \details
prepare_Rd: e2f3Wts.Rd:22-24: Dropping empty section \source
prepare_Rd: e2f3Wts.Rd:25-27: Dropping empty section \references
prepare_Rd: platsigprobes.Rd:17-19: Dropping empty section \details
prepare_Rd: platsigprobes.Rd:20-22: Dropping empty section \source
prepare_Rd: platsigprobes.Rd:23-25: Dropping empty section \references
prepare_Rd: pwLines.Rd:127-129: Dropping empty section \details
prepare_Rd: pwLines.Rd:130-132: Dropping empty section \source
prepare_Rd: pwLines.Rd:133-135: Dropping empty section \references
prepare_Rd: srcWts.Rd:19-21: Dropping empty section \details
prepare_Rd: srcWts.Rd:22-24: Dropping empty section \source
prepare_Rd: srcWts.Rd:25-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.10-data-experiment/meat/dressCheck.Rcheck/00check.log’
for details.
dressCheck.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL dressCheck ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘dressCheck’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dressCheck)
dressCheck.Rcheck/dressCheck-Ex.timings
| name | user | system | elapsed | |
| DrAsGiven | 0.944 | 0.012 | 0.953 | |
| E2F3sig.probes | 0.000 | 0.000 | 0.001 | |
| Src.probes | 0.000 | 0.000 | 0.001 | |
| c119 | 1.652 | 0.032 | 1.684 | |
| corrp116 | 0.912 | 0.012 | 0.925 | |
| e2f3Wts | 0.000 | 0.000 | 0.001 | |
| platsigprobes | 0.000 | 0.000 | 0.002 | |
| pwLines | 1.480 | 0.044 | 1.522 | |
| srcWts | 0.000 | 0.000 | 0.001 | |