Michael Zon
| Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/MetaGxPancreas |
| Branch: RELEASE_3_10 |
| Last Commit: f3dcf43 |
| Last Changed Date: 2019-11-05 04:31:17 -0400 (Tue, 05 Nov 2019) |
| Back to Build/check report for BioC 3.10 experimental data |
This page was generated on 2020-04-14 17:46:29 -0400 (Tue, 14 Apr 2020).
| Package 217/384 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| MetaGxPancreas 1.6.0 Michael Zon
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: MetaGxPancreas |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:MetaGxPancreas.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings MetaGxPancreas_1.6.0.tar.gz |
| StartedAt: 2020-04-14 13:50:12 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 14:06:15 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 962.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetaGxPancreas.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:MetaGxPancreas.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings MetaGxPancreas_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/MetaGxPancreas.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MetaGxPancreas/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MetaGxPancreas’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetaGxPancreas’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
BADEA 36.444 0.652 40.181
GRUTZMANN 35.420 0.324 42.716
loadPancreasEsets 34.852 0.304 37.989
TCGA 34.512 0.420 39.500
PEI 34.008 0.420 42.711
loadPancreasDatasets 33.348 0.420 37.112
KIRBY 33.320 0.436 36.339
HAMIDI 33.060 0.420 36.168
ICGCMICRO 33.100 0.308 36.210
JANKY 32.904 0.384 36.485
UNC 32.676 0.396 40.650
YANG 32.612 0.396 36.090
ICGCSEQ 32.656 0.276 36.804
WINTER 32.268 0.444 35.300
PCSI 31.852 0.408 36.898
BALAGURUNATH 31.596 0.496 34.414
OUH 31.188 0.416 35.664
BAUER 31.156 0.372 34.048
CHEN 31.224 0.296 34.049
COLLISON 30.920 0.312 33.981
ZHANG 30.624 0.392 33.865
LUNARDI 30.248 0.360 33.701
HAIDER 29.916 0.316 34.314
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘required.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MetaGxPancreas.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL MetaGxPancreas ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘MetaGxPancreas’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetaGxPancreas)
MetaGxPancreas.Rcheck/tests/required.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # > > proc.time() user system elapsed 0.152 0.016 0.167
MetaGxPancreas.Rcheck/MetaGxPancreas-Ex.timings
| name | user | system | elapsed | |
| BADEA | 36.444 | 0.652 | 40.181 | |
| BALAGURUNATH | 31.596 | 0.496 | 34.414 | |
| BAUER | 31.156 | 0.372 | 34.048 | |
| CHEN | 31.224 | 0.296 | 34.049 | |
| COLLISON | 30.920 | 0.312 | 33.981 | |
| GRUTZMANN | 35.420 | 0.324 | 42.716 | |
| HAIDER | 29.916 | 0.316 | 34.314 | |
| HAMIDI | 33.060 | 0.420 | 36.168 | |
| ICGCMICRO | 33.100 | 0.308 | 36.210 | |
| ICGCSEQ | 32.656 | 0.276 | 36.804 | |
| JANKY | 32.904 | 0.384 | 36.485 | |
| KIRBY | 33.320 | 0.436 | 36.339 | |
| LUNARDI | 30.248 | 0.360 | 33.701 | |
| OUH | 31.188 | 0.416 | 35.664 | |
| PCSI | 31.852 | 0.408 | 36.898 | |
| PEI | 34.008 | 0.420 | 42.711 | |
| TCGA | 34.512 | 0.420 | 39.500 | |
| UNC | 32.676 | 0.396 | 40.650 | |
| WINTER | 32.268 | 0.444 | 35.300 | |
| YANG | 32.612 | 0.396 | 36.090 | |
| ZHANG | 30.624 | 0.392 | 33.865 | |
| loadPancreasDatasets | 33.348 | 0.420 | 37.112 | |
| loadPancreasEsets | 34.852 | 0.304 | 37.989 | |