Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:47:15 -0400 (Wed, 15 Apr 2020).
Package 1484/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RSeqAn 1.6.0 August Guang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped |
Package: RSeqAn |
Version: 1.6.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSeqAn |
StartedAt: 2020-04-14 22:58:54 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 22:59:23 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 28.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSeqAn ### ############################################################################## ############################################################################## * checking for file ‘RSeqAn/DESCRIPTION’ ... OK * preparing ‘RSeqAn’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘first_example.Rmd’ using rmarkdown Building shared library for Rcpp code chunk... In file included from file13d2d1e229267.cpp:4: In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/file.h:68: In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/modifier.h:48: In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel.h:94: /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12 std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available. ^ /usr/local/clang7/include/c++/v1/shared_mutex:204:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex ^ In file included from file13d2d1e229267.cpp:4: In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/file.h:68: In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/modifier.h:48: In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel.h:94: /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12 std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available. ^ /usr/local/clang7/include/c++/v1/shared_mutex:204:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex ^ 2 errors generated. make: *** [file13d2d1e229267.o] Error 1 clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include" -I"/private/tmp/RtmpnptpWZ/sourceCpp-x86_64-apple-darwin15.6.0-1.0.4.6" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -std=c++14 -fPIC -Wall -g -O2 -c file13d2d1e229267.cpp -o file13d2d1e229267.o Quitting from lines 53-93 (first_example.Rmd) Error: processing vignette 'first_example.Rmd' failed with diagnostics: Error 1 occurred building shared library. --- failed re-building ‘first_example.Rmd’ SUMMARY: processing the following file failed: ‘first_example.Rmd’ Error: Vignette re-building failed. Execution halted