Jose M Muino
| Snapshot Date: 2019-12-09 16:45:09 -0500 (Mon, 09 Dec 2019) |
| URL: https://git.bioconductor.org/packages/CSAR |
| Branch: RELEASE_3_10 |
| Last Commit: bca533c |
| Last Changed Date: 2019-10-29 13:08:12 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2019-12-10 13:12:41 -0500 (Tue, 10 Dec 2019).
| Package 386/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CSAR 1.38.0 Jose M Muino
| malbec1 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: CSAR |
| Version: 1.38.0 |
| Command: rm -rf CSAR.buildbin-libdir && mkdir CSAR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CSAR_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CSAR.buildbin-libdir |
| StartedAt: 2019-12-10 07:23:59 -0500 (Tue, 10 Dec 2019) |
| EndedAt: 2019-12-10 07:24:52 -0500 (Tue, 10 Dec 2019) |
| EllapsedTime: 52.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CSAR_1.38.0.tgz |
| PackageFileSize: 244.1 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CSAR.buildbin-libdir && mkdir CSAR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CSAR_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CSAR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CSAR.buildbin-libdir CSAR_1.38.0.tar.gz' >>>>>>> * installing *source* package ‘CSAR’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c CSAR.c -o CSAR.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CSAR.so CSAR.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.10-bioc/meat/CSAR.buildbin-libdir/00LOCK-CSAR/00new/CSAR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CSAR) >>>>>>> >>>>>>> FIXING LINKS FOR CSAR.buildbin-libdir/CSAR/libs//CSAR.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "CSAR.buildbin-libdir/CSAR/libs//CSAR.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "CSAR.buildbin-libdir/CSAR/libs//CSAR.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "CSAR.buildbin-libdir/CSAR/libs//CSAR.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "CSAR.buildbin-libdir/CSAR/libs//CSAR.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "CSAR.buildbin-libdir/CSAR/libs//CSAR.so"