Peng Ni
| Snapshot Date: 2019-12-18 16:46:09 -0500 (Wed, 18 Dec 2019) |
| URL: https://git.bioconductor.org/packages/dSimer |
| Branch: RELEASE_3_10 |
| Last Commit: 34f87d4 |
| Last Changed Date: 2019-10-29 13:09:41 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2019-12-19 12:56:09 -0500 (Thu, 19 Dec 2019).
| Package 488/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Peng Ni
| malbec1 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: dSimer |
| Version: 1.12.0 |
| Command: rm -rf dSimer.buildbin-libdir && mkdir dSimer.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dSimer.buildbin-libdir dSimer_1.12.0.tar.gz |
| StartedAt: 2019-12-19 08:59:40 -0500 (Thu, 19 Dec 2019) |
| EndedAt: 2019-12-19 09:00:50 -0500 (Thu, 19 Dec 2019) |
| EllapsedTime: 70.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: dSimer_1.12.0.zip |
| PackageFileSize: 4.238 MiB |
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### Running command:
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### rm -rf dSimer.buildbin-libdir && mkdir dSimer.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dSimer.buildbin-libdir dSimer_1.12.0.tar.gz
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install for i386
* installing *source* package 'dSimer' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c BOG.cpp -o BOG.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c GO2GeneAssos.cpp -o GO2GeneAssos.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ICod.cpp -o ICod.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c PSB.cpp -o PSB.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_dSimer_init.c -o R_dSimer_init.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Sun.cpp -o Sun.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o dSimer.dll tmp.def BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/dSimer.buildbin-libdir/00LOCK-dSimer/00new/dSimer/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'dSimer'
finding HTML links ... done
BOG html
CosineDFV html
FunSim html
HumanNet_sample html
HypergeometricTest html
ICod html
InformationContent html
LLSn2List html
Normalize html
PPI_HPRD html
PSB html
Separation html
Separation2Similarity html
Sun_annotation html
Sun_function html
Sun_topology html
d2g_fundo_entrezid html
d2g_fundo_symbol html
d2g_separation html
d2go_sample html
d2s_hsdn html
d2s_hsdn_sample html
dSimer-package html
get_GOterm2GeneAssos html
go2g_sample html
graphlet_sig_hprd html
interactome html
jaccardindex html
orbit_dependency_count html
plot_bipartite html
plot_heatmap html
plot_net html
plot_topo html
setWeight html
weight html
x2y_conv2_y2x html
x2y_df2list html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'dSimer' is deprecated and will be removed from Bioconductor
version 3.11
** testing if installed package can be loaded from final location
Warning: Package 'dSimer' is deprecated and will be removed from Bioconductor
version 3.11
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'dSimer' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c BOG.cpp -o BOG.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c GO2GeneAssos.cpp -o GO2GeneAssos.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ICod.cpp -o ICod.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c PSB.cpp -o PSB.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_dSimer_init.c -o R_dSimer_init.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Sun.cpp -o Sun.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o dSimer.dll tmp.def BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/dSimer.buildbin-libdir/dSimer/libs/x64
** testing if installed package can be loaded
Warning: Package 'dSimer' is deprecated and will be removed from Bioconductor
version 3.11
* MD5 sums
packaged installation of 'dSimer' as dSimer_1.12.0.zip
* DONE (dSimer)