BioC 3.1: CHECK report for spkTools on moscato2
This page was generated on 2015-10-09 09:28:27 -0700 (Fri, 09 Oct 2015).
spkTools 1.24.0
Matthew N McCall
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/spkTools | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
| Package: spkTools
|
| Version: 1.24.0
|
| Command: rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.24.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.24.0.tar.gz
|
| StartedAt: 2015-10-09 06:28:58 -0700 (Fri, 09 Oct 2015)
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| EndedAt: 2015-10-09 06:31:29 -0700 (Fri, 09 Oct 2015)
|
| EllapsedTime: 150.5 seconds
|
| RetCode: 0
|
| Status: OK
|
| CheckDir: spkTools.Rcheck
|
| Warnings: 0
|
Command output
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###
### Running command:
###
### rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.24.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.24.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/spkTools.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spkTools/DESCRIPTION' ... OK
* this is package 'spkTools' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spkTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [54s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
spkTools 20.72 0.06 20.78
spkAll 19.29 0.03 19.43
spkGNN 6.10 0.00 6.10
** running examples for arch 'x64' ... [47s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
spkTools 16.58 0.09 16.68
spkAll 16.35 0.04 16.43
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.1-bioc/meat/spkTools.Rcheck/00check.log'
for details.
spkTools.Rcheck/00install.out:
install for i386
* installing *source* package 'spkTools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'spkTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spkTools' as spkTools_1.24.0.zip
* DONE (spkTools)
spkTools.Rcheck/examples_i386/spkTools-Ex.timings:
| name | user | system | elapsed
|
| SpikeInExpressSet-class | 0.27 | 0.00 | 0.26 |
|
| plotSpkBox | 0.83 | 0.03 | 0.86 |
|
| spkAccSD | 0.21 | 0.02 | 0.23 |
|
| spkAll | 19.29 | 0.03 | 19.43 |
|
| spkAnova | 0.09 | 0.00 | 0.09 |
|
| spkBal | 0.09 | 0.02 | 0.11 |
|
| spkBox | 0.91 | 0.03 | 0.93 |
|
| spkDensity | 0.15 | 0.00 | 0.16 |
|
| spkGNN | 6.1 | 0.0 | 6.1 |
|
| spkMA | 1.61 | 0.00 | 1.61 |
|
| spkPair | 0.16 | 0.01 | 0.17 |
|
| spkPairNS | 0.11 | 0.00 | 0.11 |
|
| spkPot | 0.73 | 0.00 | 0.73 |
|
| spkQuantile | 0.09 | 0.00 | 0.09 |
|
| spkSlope | 0.08 | 0.02 | 0.10 |
|
| spkTools | 20.72 | 0.06 | 20.78 |
|
| spkVar | 0.07 | 0.00 | 0.07 |
|
| summarySpkBox | 0.76 | 0.02 | 0.78 |
|
spkTools.Rcheck/examples_x64/spkTools-Ex.timings:
| name | user | system | elapsed
|
| SpikeInExpressSet-class | 0.22 | 0.00 | 0.22 |
|
| plotSpkBox | 0.90 | 0.03 | 0.93 |
|
| spkAccSD | 0.34 | 0.00 | 0.34 |
|
| spkAll | 16.35 | 0.04 | 16.43 |
|
| spkAnova | 0.11 | 0.00 | 0.11 |
|
| spkBal | 0.10 | 0.02 | 0.11 |
|
| spkBox | 1.12 | 0.03 | 1.16 |
|
| spkDensity | 0.29 | 0.02 | 0.29 |
|
| spkGNN | 4.93 | 0.00 | 4.93 |
|
| spkMA | 1.62 | 0.00 | 1.62 |
|
| spkPair | 0.21 | 0.00 | 0.20 |
|
| spkPairNS | 0.14 | 0.00 | 0.14 |
|
| spkPot | 0.92 | 0.01 | 0.94 |
|
| spkQuantile | 0.11 | 0.02 | 0.12 |
|
| spkSlope | 0.14 | 0.00 | 0.14 |
|
| spkTools | 16.58 | 0.09 | 16.68 |
|
| spkVar | 0.14 | 0.00 | 0.14 |
|
| summarySpkBox | 1.25 | 0.00 | 1.25 |
|