BioC experimental data: CHECK report for FunciSNP.data on perceval
This page was generated on 2015-04-08 17:41:32 -0700 (Wed, 08 Apr 2015).
FunciSNP.data 1.1.1 Simon G. Coetzee
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/FunciSNP.data | Last Changed Rev: 3075 / Revision: 3266 | Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | ERROR | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | ERROR | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ ERROR ] | OK |
Summary
Package: FunciSNP.data |
Version: 1.1.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch FunciSNP.data_1.1.1.tar.gz |
StartedAt: 2015-04-08 09:48:57 -0700 (Wed, 08 Apr 2015) |
EndedAt: 2015-04-08 09:53:15 -0700 (Wed, 08 Apr 2015) |
EllapsedTime: 258.1 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: FunciSNP.data.Rcheck |
Warnings: NA |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch FunciSNP.data_1.1.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/FunciSNP.data.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FunciSNP.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FunciSNP.data’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FunciSNP.data’ can be installed ... [17s/25s] OK
* checking installed package size ... NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 3.2Mb
extdata 2.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘FunciSNP.data-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lincRNA.hg19.rda
> ### Title: Known long intergentic non coding RNA
> ### Aliases: lincRNA.hg19.rda lincRNA
> ### Keywords: datasets
>
> ### ** Examples
>
> lincRNA
RangedData with 14331 rows and 2 value columns across 41 spaces
Error in end(PartitioningByEnd(x)) :
error in evaluating the argument 'x' in selecting a method for function 'end': Error: could not find function "PartitioningByEnd"
Calls: <Anonymous> ... <Anonymous> -> fast_path_FUN -> .unlist_NL_subscript -> end
Execution halted
FunciSNP.data.Rcheck/00install.out:
* installing *source* package ‘FunciSNP.data’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FunciSNP.data)
FunciSNP.data.Rcheck/FunciSNP.data-Ex.timings:
name | user | system | elapsed
|
FunciSNP.builtin.features | 0.614 | 0.028 | 1.046 |
|