BioC experimental data: CHECK report for seqc on moscato1
This page was generated on 2015-04-08 17:41:19 -0700 (Wed, 08 Apr 2015).
seqc 1.0.0 Yang Liao and Wei Shi
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/seqc | Last Changed Rev: 3139 / Revision: 3266 | Last Changed Date: 2014-12-01 21:33:32 -0800 (Mon, 01 Dec 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK |
Summary
Package: seqc
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Version: 1.0.0
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Command: rm -rf seqc.buildbin-libdir seqc.Rcheck && mkdir seqc.buildbin-libdir seqc.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seqc.buildbin-libdir seqc_1.0.0.tar.gz >seqc.Rcheck\00install.out 2>&1 && cp seqc.Rcheck\00install.out seqc-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=seqc.buildbin-libdir --install="check:seqc-install.out" --force-multiarch --no-vignettes --timings seqc_1.0.0.tar.gz
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StartedAt: 2015-04-08 11:44:54 -0700 (Wed, 08 Apr 2015)
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EndedAt: 2015-04-08 11:56:05 -0700 (Wed, 08 Apr 2015)
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EllapsedTime: 671.2 seconds
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RetCode: 0
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Status: WARNINGS
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CheckDir: seqc.Rcheck
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Warnings: 1
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Command output
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### Running command:
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### rm -rf seqc.buildbin-libdir seqc.Rcheck && mkdir seqc.buildbin-libdir seqc.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seqc.buildbin-libdir seqc_1.0.0.tar.gz >seqc.Rcheck\00install.out 2>&1 && cp seqc.Rcheck\00install.out seqc-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=seqc.buildbin-libdir --install="check:seqc-install.out" --force-multiarch --no-vignettes --timings seqc_1.0.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/seqc.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqc' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqc' can be installed ... OK
* checking installed package size ... NOTE
installed size is 306.9Mb
sub-directories of 1Mb or more:
data 306.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
Error in tools:::.parse_CITATION_file(file, meta$Encoding): non-ASCII input in a CITATION file without a declared encoding
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
WARNING: There was 1 warning.
NOTE: There was 1 note.
See
'D:/biocbld/bbs-3.0-data-experiment/meat/seqc.Rcheck/00check.log'
for details.
seqc.Rcheck/00install.out:
install for i386
* installing *source* package 'seqc' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'seqc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqc' as seqc_1.0.0.zip
* DONE (seqc)
seqc.Rcheck/examples_i386/seqc-Ex.timings:
name | user | system | elapsed
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FCData | 0.60 | 0.03 | 0.63 |
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FCJunctions | 0 | 0 | 0 |
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SEQC-package | 0.01 | 0.00 | 0.01 |
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taqman | 0 | 0 | 0 |
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seqc.Rcheck/examples_x64/seqc-Ex.timings:
name | user | system | elapsed
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FCData | 0.77 | 0.13 | 0.89 |
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FCJunctions | 0.01 | 0.00 | 0.02 |
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SEQC-package | 0.02 | 0.00 | 0.01 |
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taqman | 0.01 | 0.00 | 0.02 |
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