SpikeIn 1.7.1
Rafael A. Irizarry
| Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/SpikeIn | | Last Changed Rev: 3075 / Revision: 3266 | | Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf SpikeIn.buildbin-libdir SpikeIn.Rcheck && mkdir SpikeIn.buildbin-libdir SpikeIn.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SpikeIn.buildbin-libdir SpikeIn_1.7.1.tar.gz >SpikeIn.Rcheck\00install.out 2>&1 && cp SpikeIn.Rcheck\00install.out SpikeIn-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=SpikeIn.buildbin-libdir --install="check:SpikeIn-install.out" --force-multiarch --no-vignettes --timings SpikeIn_1.7.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SpikeIn/DESCRIPTION' ... OK
* this is package 'SpikeIn' version '1.7.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpikeIn' can be installed ... OK
* checking installed package size ... NOTE
installed size is 63.1Mb
sub-directories of 1Mb or more:
data 63.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found directory 'R' with no source files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Error in tools:::.check_packages_used(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
* checking S3 generic/method consistency ... WARNING
Error in tools::checkS3methods(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
Error in tools::checkReplaceFuns(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... NOTE
Error in tools::checkFF(package = "SpikeIn", registration = FALSE, check_DUP = TRUE) :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error in tools::codoc(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
Error in tools::codocClasses(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
* checking Rd \usage sections ... NOTE
Error in tools::checkDocStyle(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: package needs dependence on R (>= 2.10)
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
WARNING: There were 5 warnings.
NOTE: There were 4 notes.
See
'D:/biocbld/bbs-3.0-data-experiment/meat/SpikeIn.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'SpikeIn' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'SpikeIn' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SpikeIn' as SpikeIn_1.7.1.zip
* DONE (SpikeIn)