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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘SeqArray’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include" -fPIC -mtune=core2 -g -O2 -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include" -fPIC -mtune=core2 -g -O2 -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
ConvVCF2GDS.cpp: In function ‘SEXPREC* sqa_Parse_VCF4(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
ConvVCF2GDS.cpp:767: warning: comparison between signed and unsigned integer expressions
ConvVCF2GDS.cpp:793: warning: comparison between signed and unsigned integer expressions
ConvVCF2GDS.cpp:860: warning: comparison between signed and unsigned integer expressions
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include" -fPIC -mtune=core2 -g -O2 -Wall -c R_SeqArray.c -o R_SeqArray.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include" -fPIC -mtune=core2 -g -O2 -Wall -c ReadByVariant.cpp -o ReadByVariant.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include" -fPIC -mtune=core2 -g -O2 -Wall -c SeqArray.cpp -o SeqArray.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvVCF2GDS.o R_SeqArray.o ReadByVariant.o SeqArray.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘SeqArrayTutorial.Rnw’
** testing if installed package can be loaded
* DONE (SeqArray)