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BioC 3.0: BUILD report for Resourcerer on zin1

This page was generated on 2014-10-10 09:36:20 -0700 (Fri, 10 Oct 2014).

Package 739/929HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Resourcerer 1.39.0
Jianhua Zhang
Snapshot Date: 2014-10-09 16:20:10 -0700 (Thu, 09 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Resourcerer
Last Changed Rev: 88840 / Revision: 95260
Last Changed Date: 2014-04-11 14:21:21 -0700 (Fri, 11 Apr 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: Resourcerer
Version: 1.39.0
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Resourcerer
StartedAt: 2014-10-09 17:32:37 -0700 (Thu, 09 Oct 2014)
EndedAt: 2014-10-09 17:33:54 -0700 (Thu, 09 Oct 2014)
EllapsedTime: 77.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Resourcerer
###
##############################################################################
##############################################################################


* checking for file ‘Resourcerer/DESCRIPTION’ ... OK
* preparing ‘Resourcerer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unlist, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: S4Vectors
Loading required package: IRanges

Attaching package: ‘AnnotationDbi’

The following object is masked from ‘package:GenomeInfoDb’:

    species

Warning in download.file(srcUrl, fileName, method = "internal", quiet = TRUE) :
  failed to create a data connection

Error: processing vignette 'Resourcerer.Rnw' failed with diagnostics:
 chunk 2 
Error in loadFromUrl(url, destDir) : 
  URL ftp://occams.dfci.harvard.edu/pub/bio/tgi/data/Resourcerer/Human/Agilent_Human1_cDNA.zip is incorrect or the target site is not responding!
Execution halted