Package: ccTutorial

Version: 1.0.17

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ccTutorial_1.0.17.tar.gz

StartedAt: 2011-07-06 14:48:45 -0700 (Wed, 06 Jul 2011)

EndedAt: 2011-07-06 15:04:58 -0700 (Wed, 06 Jul 2011)

EllapsedTime: 973.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ccTutorial.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.9-data-experiment/meat/ccTutorial.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccTutorial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccTutorial' version '1.0.17'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ccTutorial' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 790.3Mb
  sub-directories of 1Mb or more:
    data            77.8Mb
    doc              5.4Mb
    exonerateData  202.3Mb
    expression      49.9Mb
    PairData       448.5Mb
    vignettes        6.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.9-data-experiment/meat/ccTutorial.Rcheck/00check.log'
for details

* installing *source* package 'ccTutorial' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: grid

Attaching package: 'affy'

The following object(s) are masked from 'package:Ringo':

    probes

Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI

Loading required package: SparseM
Package SparseM (0.89) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve


groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ccTutorial.Rnw' 
   'ccTutorialSupplement.Rnw' 
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

* DONE (ccTutorial)

name	user	system	elapsed
X	30.28	0.39	87.81
arrayGenesToProbeSets	0.05	0.02	0.39
barreraExpressionX	1.35	0.03	1.57
chersX	1.01	0.00	1.14
mm9g2p	1.48	0.01	1.66
mm9gene2GO	0.08	0.00	0.13
mm9genes	0.16	0.00	0.17
probeAnno	0	0	0