Package: ind1KG

Version: 0.1.8

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ind1KG_0.1.8.tar.gz

StartedAt: 2011-07-06 15:53:48 -0700 (Wed, 06 Jul 2011)

EndedAt: 2011-07-06 15:58:15 -0700 (Wed, 06 Jul 2011)

EllapsedTime: 267.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ind1KG.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.9-data-experiment/meat/ind1KG.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* this is package 'ind1KG' version '0.1.8'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ind1KG' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 181.7Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    doc        1.3Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   'ind1KG.Rnw'

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.9-data-experiment/meat/ind1KG.Rcheck/00check.log'
for details

* installing *source* package 'ind1KG' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ind1KG.Rnw' 
   'nov09rv.Rnw' 
** testing if installed package can be loaded

* DONE (ind1KG)

name	user	system	elapsed
c6snp	14.92	0.06	15.53
gw6c6.snp240	0.25	0.00	0.27
n240	32.20	0.19	34.92
oregdf	0.02	0.00	0.01
pup240_500k	2.82	0.08	3.11
pup240_disc	0.13	0.00	0.24
rsgdf	0.02	0.00	0.01
yri240_6	0.96	0.00	1.58