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Package 365/516 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
pdInfoBuilder 1.18.0 Benilton Carvalho
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK | |||||
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | ERROR |
Package: pdInfoBuilder |
Version: 1.18.0 |
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch pdInfoBuilder_1.18.0.tar.gz |
StartedAt: 2012-01-09 04:50:05 -0800 (Mon, 09 Jan 2012) |
EndedAt: 2012-01-09 04:52:02 -0800 (Mon, 09 Jan 2012) |
EllapsedTime: 117.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: pdInfoBuilder.Rcheck |
Warnings: 0 |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/pdInfoBuilder.Rcheck' * using R version 2.14.1 (2011-12-22) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'pdInfoBuilder/DESCRIPTION' ... OK * this is package 'pdInfoBuilder' version '1.18.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'pdInfoBuilder' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE combinePgfClfProbesetsMps: no visible binding for global variable 'ptype' parseNgsTrio: no visible binding for global variable 'mismatch' parseProbeSequenceFile: no visible binding for global variable 'count' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK
pdInfoBuilder.Rcheck/00install.out:
* installing *source* package 'pdInfoBuilder' ... ** libs x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c pdInfoBuilder.c -o pdInfoBuilder.o x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR installing to D:/biocbld/bbs-2.9-bioc/meat/pdInfoBuilder.Rcheck/pdInfoBuilder/libs/x64 ** R ** inst ** preparing package for lazy loading ================================================================================ Large dataset support for 'oligo/crlmm': Disabled - Load 'ff' ================================================================================ Parallel computing support for 'oligo/crlmm': Disabled - Load 'ff' - Load 'snow' - Use options(cluster=makeCluster(...)) ================================================================================ ** help *** installing help indices ** building package indices ... *** tangling vignette sources ... 'BuildingPDInfoPkgs.Rnw' 'howto-AffymetrixMapping.Rnw' ** testing if installed package can be loaded ================================================================================ Large dataset support for 'oligo/crlmm': Disabled - Load 'ff' ================================================================================ Parallel computing support for 'oligo/crlmm': Disabled - Load 'ff' - Load 'snow' - Use options(cluster=makeCluster(...)) ================================================================================ * DONE (pdInfoBuilder)
pdInfoBuilder.Rcheck/pdInfoBuilder-Ex.timings:
name | user | system | elapsed | |
AffyExpressionPDInfoPkgSeed-class | 0 | 0 | 0 | |
AffySNPCNVPDInfoPkgSeed-class | 0 | 0 | 0 | |
AffySNPCNVPDInfoPkgSeed2-class | 0 | 0 | 0 | |
AffySNPPDInfoPkgSeed-class | 0.65 | 0.00 | 0.66 | |
AffySNPPDInfoPkgSeed2-class | 0 | 0 | 0 | |
AffySTPDInfoPkgSeed-class | 0.02 | 0.00 | 0.02 | |
AffyTilingPDInfoPkgSeed-class | 0 | 0 | 0 | |
NgsExpressionPDInfoPkgSeed-class | 0 | 0 | 0 | |
NgsTilingPDInfoPkgSeed-class | 0 | 0 | 0 | |
NimbleGenPDInfoPkgSeed-class | 0 | 0 | 0 | |
makePdInfoPackage | 0 | 0 | 0 | |