ccTutorial 1.0.17
Joern Toedling
| Snapshot Date: 2011-07-02 23:15:14 -0700 (Sat, 02 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial | | Last Changed Rev: 1044 / Revision: 1676 | | Last Changed Date: 2009-10-13 18:55:23 -0700 (Tue, 13 Oct 2009) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | WARNINGS | |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.7) / i386 | OK | [ WARNINGS ] | OK |
* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/ccTutorial.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ccTutorial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccTutorial' version '1.0.17'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ccTutorial' can be installed ... OK
* checking installed package size ... NOTE
installed size is 790.4Mb
sub-directories of 1Mb or more:
data 77.8Mb
doc 5.4Mb
exonerateData 202.3Mb
expression 49.9Mb
PairData 448.5Mb
vignettes 6.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: package needs dependence on R (>= 2.10)
* checking sizes of PDF files under inst/doc ... NOTE
'qpdf' made some significant size reductions:
compacted 'ccTutorial.pdf' from 600Kb to 227Kb
compacted 'ccTutorialSupplement.pdf' from 4.6Mb to 3.4Mb
consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Unused files in inst/doc which are pointless or misleading
as they will be re-created from the vignettes:
ccTutorial.R
ccTutorialSupplement.R
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
'/Users/biocbuild/bbs-2.8-data-experiment/meat/ccTutorial.Rcheck/00check.log'
for details
* installing *source* package 'ccTutorial' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from 'package:base':
det
Loading required package: grid
Attaching package: 'affy'
The following object(s) are masked from 'package:Ringo':
probes
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.89) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from 'package:base':
backsolve
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
* DONE (ccTutorial)