Package: SpikeInSubset

Version: 1.2.8

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings SpikeInSubset_1.2.8.tar.gz

StartedAt: 2011-10-19 01:18:24 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 01:18:52 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 27.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: SpikeInSubset.Rcheck

Warnings: 2

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/SpikeInSubset.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SpikeInSubset/DESCRIPTION’ ... OK
* this is package ‘SpikeInSubset’ version ‘1.2.8’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘SpikeInSubset’ can be installed ... WARNING
Found the following significant warnings:
  Warning: /loc/home/biocbuild/bbs-2.8-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType ‘instance’ is unrecognized
See ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/SpikeInSubset.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 20.5Mb
  sub-directories of 1Mb or more:
    data  20.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: xhyb.Rd: docType ‘instance’ is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/SpikeInSubset.Rcheck/00check.log’
for details

* installing *source* package ‘SpikeInSubset’ ...
** R
** data
** preparing package for lazy loading
** help
Warning: /loc/home/biocbuild/bbs-2.8-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType ‘instance’ is unrecognized
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (SpikeInSubset)