Package: genomes

Version: 1.8.1

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch genomes_1.8.1.tar.gz

StartedAt: 2011-10-20 15:07:34 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 15:08:48 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 73.5 seconds

RetCode: 0

Status:  OK

CheckDir: genomes.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/genomes.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'genomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomes' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'genomes' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

name	user	system	elapsed
acc2date	0.214	0.016	9.965
doublingTime	0.278	0.013	0.291
genomes-lines	0.278	0.012	0.290
genomes-plot	0.215	0.010	0.225
genomes-print	0.154	0.008	0.162
genomes-subset	0.178	0.006	0.184
genomes-summary	0.033	0.001	0.035
genomes-update	0.003	0.001	0.004
genomes	0.262	0.018	0.280
genus	0.334	0.010	0.345
image2	0.094	0.002	0.096
lenvs	0.035	0.001	0.036
leuks	0.179	0.004	0.183
like	0.182	0.009	0.191
lproks	0.455	0.025	0.480
plotby	0.785	0.021	0.807
pub2date	0.196	0.009	1.848
pubmed	0.149	0.006	0.577
revhist	0.200	0.010	12.209
species	0.467	0.009	0.485
table2	0.024	0.002	0.027
taxid2names	0.010	0.001	0.451
term2neighbor	0.064	0.004	1.176
term2summary	1.573	0.041	4.425
top	0.412	0.006	0.438
virus	0.221	0.009	0.907
year	0.132	0.006	0.146