Package: farms

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch farms_1.3.0.tar.gz

StartedAt: 2011-03-17 16:12:25 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:13:06 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 41.2 seconds

RetCode: 0

Status:  OK

CheckDir: farms.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/farms.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'farms/DESCRIPTION' ... OK
* this is package 'farms' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'farms' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'farms' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (farms)

name	user	system	elapsed
INI_Calls-class	0.177	0.002	0.180
INIcalls-methods	0.730	0.006	0.736
expFarms	0.055	0.001	0.057
generateExprVal.method.farms	0.006	0.001	0.011
getI_Eset-methods	0.738	0.007	0.746
getI_ProbeSets-methods	0.713	0.005	0.721
getNI_Eset-methods	0.702	0.004	0.706
getNI_ProbeSets-methods	0.725	0.004	0.729
lFarms	0.056	0.001	0.057
plot-methods	0.715	0.005	0.721
qFarms	0.057	0.001	0.058
summary-methods	0.729	0.005	0.734