beadarray 2.2.0
Mark Dunning
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/beadarray | | Last Changed Rev: 55866 / Revision: 59457 | | Last Changed Date: 2011-05-27 08:12:50 -0700 (Fri, 27 May 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'beadarray' ...
** libs
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include" -O3 -Wall -std=gnu99 -c BASH.c -o BASH.o
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include" -O3 -Wall -std=gnu99 -c HULK.c -o HULK.o
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include" -O3 -Wall -std=gnu99 -c determiningGridPositions.c -o determiningGridPositions.o
determiningGridPositions.c: In function 'roundLocsFileValues':
determiningGridPositions.c:7:12: warning: unused variable 'vecLength'
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include" -O3 -Wall -std=gnu99 -c findAllOutliers.c -o findAllOutliers.o
findAllOutliers.c: In function 'findBeadStatus':
findAllOutliers.c:155:9: warning: 'm' may be used uninitialized in this function
findAllOutliers.c:155:12: warning: 'ma' may be used uninitialized in this function
findAllOutliers.c: In function 'findAllOutliers':
findAllOutliers.c:226:20: warning: 'status' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include" -O3 -Wall -std=gnu99 -c imageProcessing.c -o imageProcessing.o
imageProcessing.c: In function 'illuminaBackground':
imageProcessing.c:82:0: warning: ignoring #pragma omp parallel
imageProcessing.c: In function 'medianBackground':
imageProcessing.c:126:0: warning: ignoring #pragma omp parallel
imageProcessing.c: In function 'illuminaSharpen':
imageProcessing.c:224:0: warning: ignoring #pragma omp parallel
imageProcessing.c:231:0: warning: ignoring #pragma omp parallel
gcc -shared -s -static-libgcc -o beadarray.dll tmp.def BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -LE:/biocbld/bbs-2.8-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "boxplot" in "beadarray"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to beadarray version 2.2.0
There have been major changes to beadarray since Bioconductor 2.6 (April 2010). Please see package vignette for details
* MD5 sums
packaged installation of 'beadarray' as beadarray_2.2.0.zip
* DONE (beadarray)