RdbiPgSQL 1.25.1
Jianhua Zhang
| Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RdbiPgSQL | | Last Changed Rev: 52485 / Revision: 53825 | | Last Changed Date: 2011-02-04 15:41:19 -0800 (Fri, 04 Feb 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.6) / i386 | OK | [ ERROR ] | ERROR |
* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RdbiPgSQL/DESCRIPTION' ... OK
* this is package 'RdbiPgSQL' version '1.25.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RdbiPgSQL' can be installed ... ERROR
Installation failed.
See '/Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/00install.out' for details.
* installing *source* package 'RdbiPgSQL' ...
creating cache ./config.cache
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/pgsql/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c PgSQL.c -o PgSQL.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/pgsql/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: 'mkInteger' defined but not used
PgSQL.h:18: warning: 'mkLogical' defined but not used
PgSQL.h:27: warning: 'mkString_safe' defined but not used
PgSQL.h:33: warning: 'fetchPgString' defined but not used
PgSQL.h:46: warning: 'fetchPgInteger' defined but not used
PgSQL.h:66: warning: 'fetchPgDouble' defined but not used
PgSQL.h:89: warning: 'fetchPgLogical' defined but not used
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -L/usr/local/pgsql/lib -lpq -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: in /usr/local/pgsql/lib/libpq.dylib, file was built for unsupported file format which is not the architecture being linked (i386)
installing to /Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs/i386/RdbiPgSQL.so':
dlopen(/Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs/i386/RdbiPgSQL.so, 6): Symbol not found: _PQbackendPID
Referenced from: /Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs/i386/RdbiPgSQL.so
Expected in: flat namespace
in /Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs/i386/RdbiPgSQL.so
Error in tools:::.test_load_package("RdbiPgSQL", "/Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck") :
loading failed
Execution halted
ERROR: loading failed
* removing '/Users/biocbuild/bbs-2.8-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL'