Package: RbcBook1

Version: 1.19.1

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RbcBook1_1.19.1.tar.gz

StartedAt: 2011-03-17 17:13:32 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 17:14:03 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 31.8 seconds

RetCode: 0

Status:  OK

CheckDir: RbcBook1.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/RbcBook1.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RbcBook1/DESCRIPTION' ... OK
* this is package 'RbcBook1' version '1.19.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RbcBook1' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   7.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcStangle: possible error in grep("chapter{", txt,
  extended = FALSE): unused argument(s) (extended =
  FALSE)
checkPackage: possible error in sub("Rpackage{", "",
  sub("}", "", unique(p), extended = FALSE), extended
  = FALSE): unused argument(s) (extended = FALSE)
checkPackage: possible error in sub("}", "",
  unique(p), extended = FALSE): unused argument(s)
  (extended = FALSE)
checkRnw: possible error in
  grep("caption.*%.*[a-zA-Z]", txt, extended =
  FALSE): unused argument(s) (extended = FALSE)
remapAff: no visible binding for global variable
  'hgu95av2SYMBOL'
* checking Rd files ... NOTE
prepare_Rd: requireAllBook1.Rd:9-10: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: rpart
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'RbcBook1' ...
** R
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RbcBook1)

name	user	system	elapsed
bcStangle	0	0	0
bcSweave	0.001	0.000	0.000
bcr	0.677	0.024	0.702
checkVerbatimLines	0.008	0.000	0.013
imageSize	0	0	0
perf	0.002	0.000	0.002
requireAllBook1	0.000	0.000	0.001
rpart2gNEL	0.129	0.012	0.190