Package: MassSpecWavelet

Version: 1.18.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch MassSpecWavelet_1.18.0.tar.gz

StartedAt: 2011-10-20 15:17:08 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 15:18:05 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 57.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: MassSpecWavelet.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/MassSpecWavelet.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassSpecWavelet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassSpecWavelet' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassSpecWavelet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: getRidgeValue.Rd:24-26: Dropping empty section \examples
prepare_Rd: sav.gol.Rd:28-29: Dropping empty section \examples
prepare_Rd: smoothDWT.Rd:22-25: Dropping empty section \details
prepare_Rd: smoothDWT.Rd:29: Dropping empty section \references
prepare_Rd: smoothDWT.Rd:32-34: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   MassSpecWavelet.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/MassSpecWavelet.Rcheck/00check.log'
for details

* installing *source* package 'MassSpecWavelet' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c convolve2.c -o convolve2.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o MassSpecWavelet.dll tmp.def convolve2.o -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/MassSpecWavelet.Rcheck/MassSpecWavelet/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassSpecWavelet)

name	user	system	elapsed
MassSpecWavelet.package	5.79	0.27	6.06
cwt	0.80	0.03	0.83
extendLength	0	0	0
extendNBase	0	0	0
getLocalMaximumCWT	0.36	0.00	0.36
getRidge	0.65	0.00	0.65
identifyMajorPeaks	6.07	0.22	6.28
localMaximum	0	0	0
peakDetectionCWT	8.98	0.36	9.35
plotLocalMax	0.34	0.01	0.36
plotPeak	4.66	0.14	4.79
plotRidgeList	0.56	0.00	0.57
tuneInPeakInfo	6.03	0.11	6.14