Package: Icens

Version: 1.23.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Icens_1.23.0.tar.gz

StartedAt: 2011-03-17 16:37:18 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:37:56 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 37.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: Icens.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Icens.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.23.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Icens' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  CMVdata Heavy Lightly
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'testbv.R'
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.640501e-16
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
 OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/Icens.Rcheck/00check.log'
for details

* installing *source* package 'Icens' ...
** R
** data
** preparing package for lazy loading
Loading required package: splines
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Icens)

name	user	system	elapsed
BVcliques	0.458	0.004	0.461
BVclmat	2.959	0.002	2.961
BVsupport	2.985	0.001	2.986
EM	0.146	0.005	0.151
EMICM	0.146	0.002	0.148
ISDM	9.991	0.003	9.995
MLEintvl	0.054	0.000	0.055
Maclist	0.026	0.001	0.026
Macmat	0.028	0.000	0.028
PGM	0.232	0.003	0.236
Plotboxes	0.070	0.001	0.070
VEM	0.213	0.001	0.214
cmv	0.001	0.000	0.002
cosmesis	0.002	0.001	0.002
hiv	0.002	0.000	0.003
plot.icsurv	0.531	0.004	0.535
pruitt	0.002	0.000	0.002