Package: HTqPCR

Version: 1.5.4

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch HTqPCR_1.5.4.tar.gz

StartedAt: 2011-03-17 16:36:20 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:37:48 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 88.1 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'HTqPCR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTqPCR' version '1.5.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTqPCR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'HTqPCR' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	3.659	0.015	3.687
cbind	0.032	0.001	0.033
changeCtLayout	0.030	0.001	0.031
clusterCt	0.618	0.008	0.626
filterCategory	0.101	0.002	0.103
filterCtData	0.230	0.001	0.231
heatmapSig	1.628	0.006	1.633
limmaCtData	0.898	0.004	0.903
mannwhitneyCtData	1.497	0.001	1.499
normalizeCtData	0.370	0.004	0.374
plotCVBoxes	0.175	0.001	0.175
plotCtArray	0.161	0.002	0.163
plotCtBoxes	0.053	0.000	0.054
plotCtCard	0.052	0.001	0.053
plotCtCategory	2.338	0.017	2.355
plotCtCor	0.053	0.000	0.054
plotCtDensity	0.034	0.003	0.036
plotCtHeatmap	3.156	0.016	3.172
plotCtHistogram	0.010	0.001	0.011
plotCtOverview	0.115	0.001	0.117
plotCtPCA	0.044	0.002	0.046
plotCtPairs	0.727	0.005	0.733
plotCtRQ	0.411	0.003	0.415
plotCtReps	0.145	0.001	0.146
plotCtScatter	0.025	0.001	0.025
plotCtSignificance	0.495	0.010	0.504
plotCtVariation	0.714	0.006	0.721
plotGenes	0.026	0.001	0.027
qPCRpros	0.005	0.000	0.006
qPCRraw	0.005	0.001	0.005
qPCRset-class	0.026	0.002	0.027
readCtData	0.077	0.001	0.079
setCategory	5.481	0.222	5.704
ttestCtData	1.146	0.003	1.148