Package: DEGraph

Version: 1.1.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DEGraph_1.1.0.tar.gz

StartedAt: 2011-03-17 16:07:22 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:09:22 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 120.1 seconds

RetCode: 0

Status:  OK

CheckDir: DEGraph.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/DEGraph.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DEGraph/DESCRIPTION' ... OK
* this is package 'DEGraph' version '1.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEGraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'DEGraph' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.7.5 (2011-02-01) successfully loaded. See ?R.oo for help.
R.utils v1.7.0 (2011-03-10) successfully loaded. See ?R.utils for help.
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

* DONE (DEGraph)

name	user	system	elapsed
AN.test	5.013	0.047	5.068
BS.test	4.724	0.036	4.761
annLoi2008	0.188	0.001	0.189
classLoi2008	0.184	0.001	0.186
exprLoi2008	0.192	0.007	0.199
getConnectedComponentList	2.769	0.004	2.773
getKEGGPathways	19.682	0.111	19.949
getSignedGraph	2.780	0.023	2.802
grListKEGG	1.103	0.010	1.113
graph.T2.test	2.696	0.016	2.712
hyper.test	4.575	0.073	4.648
laplacianFromA	0.488	0.019	0.509
plotValuedGraph	10.585	0.090	10.677
randomWAMGraph	0.491	0.017	0.509
testOneConnectedComponent	2.765	0.012	2.776
testOneGraph	8.180	0.039	8.220
twoSampleFromGraph	0.474	0.014	0.489
writeAdjacencyMatrix2KGML	0.476	0.015	0.493