Package: ChIPseqR

Version: 1.5.1

Command: /Users/biocbuild/BBS/utils/build-universal.sh ChIPseqR_1.5.1.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R ChIPseqR.buildbin-libdir

StartedAt: 2011-03-17 17:55:51 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 17:56:15 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 23.4 seconds

RetCode: 0

Status:  OK

PackageFile: ChIPseqR_1.5.1.tgz

PackageFileSize: 522.5 KiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=ChIPseqR.buildbin-libdir ChIPseqR_1.5.1.tar.gz'
>>>>>>> 

* installing *source* package 'ChIPseqR' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66: warning: unused variable 'tmp_stat'
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ChIPseqR.so startScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66: warning: unused variable 'tmp_stat'
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ChIPseqR.so startScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66: warning: unused variable 'tmp_stat'
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ChIPseqR.so startScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs/x86_64
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChIPseqR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386/ChIPseqR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386/ChIPseqR.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChIPseqR.buildbin-libdir/ChIPseqR/libs/ppc/ChIPseqR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/ppc/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/ppc/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/ppc/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/ppc/ChIPseqR.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChIPseqR.buildbin-libdir/ChIPseqR/libs/x86_64/ChIPseqR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/x86_64/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/x86_64/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/x86_64/ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs/x86_64/ChIPseqR.so"