BHC 1.4.0
Rich Savage
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/BHC | | Last Changed Rev: 54800 / Revision: 59457 | | Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/BHC.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BHC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BHC' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BHC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: bhc.Rd:36-37: Dropping empty section \details
prepare_Rd: bhc.Rd:48: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
bhc.Rnw
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'D:/biocbld/bbs-2.8-bioc/meat/BHC.Rcheck/00check.log'
for details
* installing *source* package 'BHC' ...
** libs
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c CalculateHyperparameters.cpp -o CalculateHyperparameters.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c OutputDendrogramInformation.cpp -o OutputDendrogramInformation.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c ReadInData.cpp -o ReadInData.o
ReadInData.cpp: In function 'NODE* ReadInData(int, int, double, int, int*)':
ReadInData.cpp:43:36: warning: suggest parentheses around comparison in operand of '|'
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c bayeslink_binf.cpp -o bayeslink_binf.o
bayeslink_binf.cpp: In function 'double bayeslink_binf(NODE*, int, int, double, double, double, int)':
bayeslink_binf.cpp:23:12: warning: 'node1' may be used uninitialized in this function
bayeslink_binf.cpp:23:19: warning: 'node2' may be used uninitialized in this function
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c bhc.cpp -o bhc.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c binevidence.cpp -o binevidence.o
binevidence.cpp: In function 'double binevidence(NODE*, int, double**, int, int, int)':
binevidence.cpp:26:12: warning: unused variable 's1'
binevidence.cpp:26:33: warning: unused variable 's4'
x86_64-w64-mingw32-g++ -I"D:/biocbld/BBS-2˜1.8-B/R/include" -O2 -Wall -c gammaln.cpp -o gammaln.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o BHC.dll tmp.def CalculateHyperparameters.o OutputDendrogramInformation.o ReadInData.o bayeslink_binf.o bhc.o binevidence.o gammaln.o -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/BHC.Rcheck/BHC/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (BHC)