tilingArray 1.20.0
W. Huber
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/tilingArray | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/tilingArray.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'tilingArray/DESCRIPTION' ... OK
* this is package 'tilingArray' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tilingArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating tilingArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating tilingArray-manual.tex ... OK
* checking tilingArray-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/tilingArray.Rcheck
---------- Making package tilingArray ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making findsegments.d from findsegments.c
making sampleStep.d from sampleStep.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c findsegments.c -o findsegments.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c sampleStep.c -o sampleStep.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i tilingArray_res.rc -o tilingArray_res.o
gcc -std=gnu99 -shared -s -o tilingArray.dll tilingArray.def findsegments.o sampleStep.o tilingArray_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package tilingArray for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following object(s) are masked from package:base :
as.Date.numeric
Loading required package: sandwich
Loading required package: vsn
Loading required package: lattice
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
Loading required package: pixmap
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'tilingArray'
Formats: text html latex example chm
PMindex text html latex example chm
breakpointsPretend text html latex chm
class-segmentation text html latex example chm
Note: removing empty section \details in file 'comparisonPlot.Rd'
Note: removing empty section \details in file 'comparisonPlot.Rd'
comparisonPlot text html latex example chm
costMatrix text html latex example chm
findsegments text html latex example chm
normalizeByReference text html latex example chm
otherStrand text html latex example chm
plotAlongChrom text html latex example chm
plotAlongChromLegend text html latex example chm
Note: removing empty section \examples in file 'plotFeatures.Rd'
Note: removing empty section \examples in file 'plotFeatures.Rd'
plotFeatures text html latex chm
Note: removing empty section \examples in file 'plotSegmentationDots.Rd'
Note: removing empty section \examples in file 'plotSegmentationDots.Rd'
plotSegmentationDots text html latex chm
Note: removing empty section \examples in file 'plotSegmentationHeatmap.Rd'
Note: removing empty section \examples in file 'plotSegmentationHeatmap.Rd'
plotSegmentationHeatmap text html latex chm
plotpenLL text html latex example chm
posMin text html latex example chm
qcPlots text html latex example chm
readCel2eSet text html latex example chm
sampleStep text html latex example chm
segChrom text html latex example chm
segment text html latex example chm
tilingArray-package text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\tilingArray.Rcheck\00_pkg_src\tilingArray\chm\tilingArray.chm
Compile time: 0 minutes, 0 seconds
22 Topics
65 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\tilingArray.Rcheck\00_pkg_src\tilingArray\chm\tilingArray.chm, 56,294 bytes
Compression decreased file by 41,913 bytes.
adding MD5 sums
* DONE (tilingArray)