splicegear 1.14.0
Laurent Gautier
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/splicegear | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/splicegear.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'splicegear/DESCRIPTION' ... OK
* this is package 'splicegear' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'splicegear' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating splicegear-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating splicegear-manual.tex ... OK
* checking splicegear-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/splicegear.Rcheck
---------- Making package splicegear ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package splicegear for lazy loading
Loading required package: grid
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'splicegear'
Formats: text html latex example chm
Probes-class text html latex example chm
SpliceExprSet-class text html latex example chm
SpliceSites-class text html latex example chm
SpliceSitesGenomic-class text html latex example chm
as.data.frame.SpliceExprSet text html latex example chm
barplot.SpliceSites text html latex example chm
buildSpliceSites text html latex example chm
getRelSignStrength text html latex example chm
grid.helpers text html latex chm
grid.plot.SpliceSites text html latex example chm
Note: removing empty section \details in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \examples in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \details in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \examples in file 'isProbeOnSpliceSite.Rd'
isProbeOnSpliceSite text html latex chm
matchprobes2Probes text html latex chm
plot.SpliceExprSet text html latex example chm
plot.SpliceSites text html latex example chm
plot.SpliceSitesGenomic text html latex example chm
Note: removing empty section \details in file 'sort.SpliceExprSet.Rd'
Note: removing empty section \details in file 'sort.SpliceExprSet.Rd'
sort.SpliceExprSet text html latex example chm
Note: removing empty section \source in file 'spliceset.Rd'
Note: removing empty section \source in file 'spliceset.Rd'
spliceset text html latex example chm
split.SpliceSites text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\splicegear.Rcheck\00_pkg_src\splicegear\chm\splicegear.chm
Compile time: 0 minutes, 0 seconds
19 Topics
105 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\splicegear.Rcheck\00_pkg_src\splicegear\chm\splicegear.chm, 36,621 bytes
Compression decreased file by 38,923 bytes.
adding MD5 sums
* DONE (splicegear)