Package: sagenhaft

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes sagenhaft_1.12.0.tar.gz

StartedAt: 2009-04-18 17:56:47 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 17:59:53 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 185.8 seconds

RetCode: 0

Status: OK

CheckDir: sagenhaft.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/sagenhaft.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'sagenhaft/DESCRIPTION' ... OK
* this is package 'sagenhaft' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sagenhaft' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
remove.sage.artifacts: no visible binding for global variable
  'SAGEartifacts'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating sagenhaft-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating sagenhaft-manual.tex ... OK
* checking sagenhaft-manual.tex using pdflatex ... OK

* Installing *source* package 'sagenhaft' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.79) loaded.  To cite, see citation("SparseM")

Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

** help
 >>> Building/Updating help pages for package 'sagenhaft'
     Formats: text html latex example 
  error.correction                  text    html    latex   example
  extract.lib                       text    html    latex   example
  sage.library                      text    html    latex   example
  sage.library.comparison           text    html    latex   example
  sage.test                         text    html    latex   example
  sage.utilities                    text    html    latex   example
  sagelibrary.simulate              text    html    latex   example
** building package indices ...
* DONE (sagenhaft)