prada 1.18.0
Florian Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/prada | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/prada.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable 'prev'
killProgress: no visible binding for global variable
'.tkprogress.canceled'
killProgress: no visible binding for global variable
'.tkprogress.window'
progress: no visible binding for global variable '.tkprogress.window'
progress: no visible binding for '<<-' assignment to
'.tkprogress.labelText'
progress: no visible binding for global variable
'.tkprogress.labelText'
progress: no visible binding for global variable '.tkprogress.iterator'
progress: no visible binding for global variable
'.tkprogress.fallbackIterator'
progress : <anonymous>: no visible binding for '<<-' assignment to
'.tkprogress.canceled'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.iterator'
updateProgress: no visible binding for global variable
'.tkprogress.iterator'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.fallbackIterator'
updateProgress: no visible binding for global variable
'.tkprogress.fallbackIterator'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.labelText'
updateProgress: no visible binding for global variable
'.tkprogress.labelText'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating prada-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating prada-manual.tex ... OK
* checking prada-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/prada.Rcheck
---------- Making package prada ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making inPolygon.d from inPolygon.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c inPolygon.c -o inPolygon.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i prada_res.rc -o prada_res.o
gcc -std=gnu99 -shared -s -o prada.dll prada.def inPolygon.o prada_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package prada for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "prada"
Creating a new generic function for "nrow" in "prada"
Creating a new generic function for "ncol" in "prada"
Creating a new generic function for "split" in "prada"
installing man source files
installing indices
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: methods
not zipping data
installing help
>>> Building/Updating help pages for package 'prada'
Formats: text html latex example chm
analysePlate text html latex example chm
as.all text html latex example chm
barploterrbar text html latex example chm
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
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combineFrames text html latex example chm
csApply text html latex example chm
cytoFrame-class text html latex example chm
cytoSet-class text html latex example chm
data-cytoFrame text html latex example chm
data-cytoSet text html latex example chm
Note: ignoring empty \keyword entries in file 'devDims.Rd'
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devDims text html latex example chm
Note: ignoring empty \keyword entries in file 'devRes.Rd'
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devRes text html latex example chm
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
fitNorm2 text html latex example chm
gate-class text html latex example chm
gateSet-class text html latex example chm
getPradaPar text html latex example chm
new-internal text html latex chm
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
plotNorm2 text html latex example chm
plotPlate text html latex example chm
readCytoSet text html latex example chm
readFCS text html latex example chm
Note: removing empty section \examples in file 'readFCSaux.Rd'
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readFCSaux text html latex chm
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removeCensored text html latex example chm
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
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tcltkProgress text html latex example chm
threePanelPlot text html latex example chm
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
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thresholds text html latex example chm
touchFCS text html latex chm
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
vpLocation text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\prada.Rcheck\00_pkg_src\prada\chm\prada.chm
Compile time: 0 minutes, 0 seconds
28 Topics
182 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\prada.Rcheck\00_pkg_src\prada\chm\prada.chm, 59,186 bytes
Compression decreased file by 75,585 bytes.
adding MD5 sums
* DONE (prada)