ppiStats 1.8.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ppiStats | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/ppiStats.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex using pdflatex ... OK
* Installing *source* package 'ppiStats' ...
** R
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: GOstats
Loading required package: graph
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: org.Sc.sgd.db
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: ScISI
Loading required package: apComplex
Loading required package: RpsiXML
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Loading required package: lattice
Loading required package: RColorBrewer
** help
>>> Building/Updating help pages for package 'ppiStats'
Formats: text html latex example
assessSymmetry text html latex example
bpMatrix text html latex example
calcInOutDegStats text html latex example
createSummaryTables text html latex example
degreeEstimates text html latex example
estErrProbMethodOfMoments text html latex example
estimateCCMErrorRates text html latex example
estimatePPIErrorRates text html latex example
Note: removing empty section \examples in file 'findAdjacent.Rd'
findAdjacent text html latex
genBPGraph text html latex example
Note: removing empty section \references in file 'hgParams.Rd'
Note: removing empty section \examples in file 'hgParams.Rd'
hgParams text html latex
Note: removing empty section \references in file 'hgTests.Rd'
Note: removing empty section \examples in file 'hgTests.Rd'
hgTests text html latex
idProteinErrorType text html latex example
idProteinType text html latex example
inOutScatterCharts text html latex example
nullDistDoublyTestedEdges text html latex example
separateExptBySize text html latex
twPERM text html latex example
viabilityCharts text html latex example
** building package indices ...
* DONE (ppiStats)