oneChannelGUI 1.8.10
Raffaele A Calogero
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/oneChannelGUI | | Last Changed Rev: 38642 / Revision: 38965 | | Last Changed Date: 2009-04-09 02:49:06 -0700 (Thu, 09 Apr 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/oneChannelGUI.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'oneChannelGUI/DESCRIPTION' ... OK
* this is package 'oneChannelGUI' version '1.8.10'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oneChannelGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.consistentFilter: no visible binding for global variable
'.affylmGUIglobals'
.consistentFilter: no visible binding for global variable
'affylmGUIenvironment'
.consistentFilter : onOK: no visible binding for global variable
'affylmGUIenvironment'
.consistentFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
.downloadLibs: no visible binding for global variable
'.affylmGUIglobals'
.downloadLibs: no visible binding for global variable
'affylmGUIenvironment'
.gettingEG: no visible binding for global variable
'affylmGUIenvironment'
.pamr.confusion.mod: no visible binding for global variable
'which.is.max'
addAnnLib: no visible binding for global variable
'affylmGUIenvironment'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib : onOK: no visible binding for global variable
'affylmGUIenvironment'
addAnnLib : onOK: no visible binding for global variable
'.affylmGUIglobals'
addAnnLib : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
affyPlotMA: no visible binding for global variable
'affylmGUIenvironment'
affyPlotMA: no visible binding for global variable '.affylmGUIglobals'
affyPlotMA : plotFunction: no visible binding for global variable
'.affylmGUIglobals'
affyPlotMA : CopyToClip: no visible global function definition for
'tkrreplot'
affyPlotMA: no visible global function definition for 'tkrplot'
aptFolder: no visible binding for global variable '.affylmGUIglobals'
aptFolder: no visible binding for global variable
'affylmGUIenvironment'
AptMidas: no visible binding for global variable 'affylmGUIenvironment'
AptMidas: no visible binding for global variable '.affylmGUIglobals'
AptMidas: no visible binding for global variable 'tmp'
AptMidas: no visible binding for global variable 'tt'
biomartFilter: no visible binding for global variable
'.affylmGUIglobals'
buildingLocalAnnotation: no visible binding for global variable
'.affylmGUIglobals'
buildingLocalAnnotation : onOK: no visible binding for global variable
'affylmGUIenvironment'
buildingLocalAnnotation : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
buildingLocalAnnotation: no visible binding for global variable
'affylmGUIenvironment'
buildingLocalAnnotation : onOK: no visible binding for '<<-' assignment
to 'ReturnNetaffx'
buildingLocalAnnotation : onOK: no visible binding for global variable
'.affylmGUIglobals'
buildingLocalAnnotation : onCancel: no visible binding for global
variable '.affylmGUIglobals'
buildingLocalAnnotation: no visible binding for global variable
'ReturnNetaffx'
changeMenu: no visible binding for global variable
'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
chooseEDir: no visible binding for global variable '.affylmGUIglobals'
colExtract: no visible binding for global variable '.affylmGUIglobals'
colExtract : onOK: no visible binding for global variable
'affylmGUIenvironment'
colExtract : onOK: no visible binding for global variable
'.affylmGUIglobals'
colExtract : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
colExtract: no visible binding for global variable
'affylmGUIenvironment'
combineGeoMSF: no visible binding for global variable
'.affylmGUIglobals'
combineGeoMSF : onOK: no visible binding for global variable
'.affylmGUIglobals'
combineGeoMSF : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
combineGeoMSF: no visible binding for global variable
'affylmGUIenvironment'
ComputeContrasts: no visible binding for global variable
'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters: no visible binding for global variable
'affylmGUIenvironment'
consistentFilters : onOK: no visible binding for '<<-' assignment to
'ReturnFilter'
consistentFilters : onOK: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters : onCancel: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters: no visible binding for global variable
'ReturnFilter'
consistentFilters : onOK: no visible binding for global variable
'affylmGUIenvironment'
createGeoTarget: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter: no visible binding for global variable
'affylmGUIenvironment'
crosshybFilter: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter: no visible binding for global variable
'affylmGUIenvironment'
dabgFilter: no visible binding for global variable '.affylmGUIglobals'
dabgFilter : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
dabgFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter : onCancel: no visible binding for '<<-' assignment to
'ReturnVal'
dabgFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter: no visible binding for global variable 'ReturnVal'
delete.ML: no visible binding for global variable
'affylmGUIenvironment'
delete.ML: no visible binding for global variable '.affylmGUIglobals'
deleteLocalData: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
dfMAplot : onOK: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot : onCancel: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot: no visible binding for global variable 'ReturnVal'
EG2probeset: no visible binding for global variable '.affylmGUIglobals'
EG2probeset: no visible binding for global variable
'affylmGUIenvironment'
EG2probeset : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl: no visible binding for global variable
'affylmGUIenvironment'
erankProdAltSpl: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl : onCancel: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl : onOK: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl: no visible binding for '<<-' assignment to 'ReturnVal'
erankProdAltSpl : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
erankProdAltSpl: no visible binding for global variable 'ReturnVal'
erankProdAltSplFilter: no visible binding for global variable
'affylmGUIenvironment'
erankProdAltSplFilter: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSplFilter : onOK: no visible binding for global variable
'affylmGUIenvironment'
erankProdAltSplFilter : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
exonsSpecific2as: no visible binding for global variable
'.affylmGUIglobals'
exonsSpecific2as: no visible binding for global variable
'affylmGUIenvironment'
ExportfeatureNames: no visible binding for global variable
'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues1: no visible binding for global
variable 'affylmGUIenvironment'
extractAffyids: no visible binding for global variable
'.affylmGUIglobals'
extractAffyids: no visible binding for global variable
'affylmGUIenvironment'
extractAffyids : onOK: no visible binding for global variable
'affylmGUIenvironment'
extractAffyids : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
extractAffyids : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
filteringTable: no visible binding for global variable
'.affylmGUIglobals'
geneExonLibs: no visible binding for global variable
'affylmGUIenvironment'
geneExonLibs: no visible binding for global variable
'.affylmGUIglobals'
GetNormalizationMethod: no visible binding for global variable
'.affylmGUIglobals'
GetNormalizationMethod : onCancel: no visible binding for global
variable '.affylmGUIglobals'
GetNormalizationMethod : onOK: no visible binding for global variable
'.affylmGUIglobals'
GetNormalizationMethod : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment: no visible binding for global variable
'affylmGUIenvironment'
GOenrichment : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
GOenrichment : onOK: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment : onCancel: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment: no visible binding for global variable 'ReturnVal'
GOenrichment : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
initialize.extAffylmGUI: no visible binding for global variable
'affylmGUIenvironment'
initialize.extAffylmGUI: no visible binding for global variable
'.affylmGUIglobals'
inspecting.one.splice.index: no visible binding for global variable
'.affylmGUIglobals'
inspecting.one.splice.index: no visible binding for global variable
'affylmGUIenvironment'
inspecting.one.splice.index : onOK: no visible binding for global
variable 'affylmGUIenvironment'
inspecting.one.splice.index : <anonymous>: no visible binding for
global variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
'.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
'affylmGUIenvironment'
intensityFilter: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
intensityFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter : onCancel: no visible binding for '<<-' assignment to
'ReturnVal'
intensityFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter: no visible binding for global variable 'ReturnVal'
intronicBg: no visible binding for global variable
'affylmGUIenvironment'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg : onOK: no visible binding for global variable
'affylmGUIenvironment'
intronicBg : onOK: no visible binding for global variable
'.affylmGUIglobals'
intronicBg : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
IPAlistFilter: no visible binding for global variable
'affylmGUIenvironment'
IPAlistFilter: no visible binding for global variable
'.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
iqrFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
iqrFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm: no visible binding for global variable
'affylmGUIenvironment'
largedatasetNorm: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm : onCancel: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm : onOK: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
'.affylmGUIglobals'
listFilter: no visible binding for global variable
'affylmGUIenvironment'
listFilter: no visible binding for global variable '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
mapping2ensembl: no visible binding for global variable
'.affylmGUIglobals'
mapping2ensembl: no visible binding for global variable
'affylmGUIenvironment'
mapping2ensembl: no visible binding for global variable
'crosshybhuex.annotation'
mapping2ensembl: no visible binding for global variable
'crosshybmoex.annotation'
mapping2ensembl: no visible binding for global variable
'crosshybraex.annotation'
mapping2exon: no visible binding for global variable
'.affylmGUIglobals'
mapping2exon: no visible binding for global variable
'affylmGUIenvironment'
mapping2RefSeq: no visible binding for global variable
'.affylmGUIglobals'
mapping2RefSeq: no visible binding for global variable
'affylmGUIenvironment'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro : onOK: no visible binding for global variable
'.affylmGUIglobals'
masigpro : onCancel: no visible binding for global variable
'.affylmGUIglobals'
masigpro : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
masigpro.edesign: no visible binding for global variable
'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
'.affylmGUIglobals'
masigpro.edesign : onClose: no visible binding for global variable
'.affylmGUIglobals'
masigpro.edesign : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view: no visible binding for global variable
'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : onCancel: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : onOK: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : plotFunction: no visible binding for global variable
'include'
masigpro.view: no visible global function definition for 'tkrplot'
masigpro.view : onOK: no visible binding for global variable
'affylmGUIenvironment'
metaArrayIC: no visible binding for global variable
'affylmGUIenvironment'
metaArrayIC: no visible binding for global variable '.affylmGUIglobals'
metaArrayMerge : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge: no visible binding for global variable
'affylmGUIenvironment'
metaArrayMerge: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge : onCancel: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge : onOK: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
midasFilter: no visible binding for global variable
'affylmGUIenvironment'
midasFilter: no visible binding for global variable '.affylmGUIglobals'
midasFilter : onOK: no visible binding for global variable
'affylmGUIenvironment'
midasFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
ML.edesign: no visible binding for global variable
'affylmGUIenvironment'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : onClose: no visible binding for global variable
'.affylmGUIglobals'
ML.edesign : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
myExpresso: no visible binding for global variable
'affylmGUIenvironment'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
NewLimmaFile: no visible binding for global variable
'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
'.affylmGUIglobals'
normBoxplot: no visible binding for global variable
'affylmGUIenvironment'
normBoxplot: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable
'affylmGUIenvironment'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist : onCancel: no visible binding for global variable
'.affylmGUIglobals'
ocPlotHist : onOK: no visible binding for global variable
'.affylmGUIglobals'
ocPlotHist : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
ocPlotPCA: no visible binding for global variable
'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
ocPlotPCA : onCancel: no visible binding for global variable
'.affylmGUIglobals'
ocPlotPCA : onOK: no visible binding for global variable
'.affylmGUIglobals'
ocPlotPCA : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
'.affylmGUIglobals'
OpenAFile: no visible binding for global variable '.affylmGUIglobals'
OpenAGeoFile: no visible binding for global variable
'.affylmGUIglobals'
OpenAGeoFile: no visible binding for global variable
'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
'affylmGUIenvironment'
OpenBeadStudioFiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenBeadStudioFiles: no visible binding for global variable
'affylmGUIenvironment'
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
'affylmGUIenvironment'
OpenExonandTargetsfiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for '<<-' assignment to
'ReturnValX'
OpenExonandTargetsfiles : onOK: no visible binding for '<<-' assignment
to 'ReturnValX'
OpenExonandTargetsfiles: no visible binding for global variable
'ReturnValX'
OpenGeoFiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenGeoFiles: no visible binding for global variable
'affylmGUIenvironment'
OpenGeoFiles: no visible binding for global variable 'geoVSbioc'
OpenLargefiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
'affylmGUIenvironment'
plierToZero: no visible binding for global variable
'affylmGUIenvironment'
plierToZero: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable 'affylmGUIenvironment'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
'affylmGUIenvironment'
plotGO : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
plotGO : onCancel: no visible binding for global variable
'.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
'.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
'.affylmGUIglobals'
PlotOptionsv1 : onOK: no visible binding for global variable
'.affylmGUIglobals'
PlotOptionsv1 : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
rankProd: no visible binding for global variable 'affylmGUIenvironment'
rankProd: no visible binding for global variable '.affylmGUIglobals'
rankProd : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
rankProd : onOK: no visible binding for global variable
'.affylmGUIglobals'
rankProd : onCancel: no visible binding for '<<-' assignment to
'ReturnVal'
rankProd : onCancel: no visible binding for global variable
'.affylmGUIglobals'
rankProd : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
rankProd: no visible binding for global variable 'ReturnVal'
rawBoxplotPN: no visible binding for global variable
'affylmGUIenvironment'
rawBoxplotPN: no visible binding for global variable
'.affylmGUIglobals'
rawpCheck: no visible binding for global variable
'affylmGUIenvironment'
rawpCheck: no visible binding for global variable '.affylmGUIglobals'
recoverUnfiltered: no visible binding for global variable
'.affylmGUIglobals'
recoverUnfiltered: no visible binding for global variable
'affylmGUIenvironment'
recoverUnfiltered: no visible binding for global variable 'x.exon'
refseqDownload: no visible binding for global variable
'.affylmGUIglobals'
refseqDownload: no visible binding for global variable
'affylmGUIenvironment'
retrievePSRseq: no visible binding for global variable
'.affylmGUIglobals'
retrievePSRseq: no visible binding for global variable
'affylmGUIenvironment'
reviqrFilter: no visible binding for global variable
'.affylmGUIglobals'
reviqrFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
reviqrFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
reviqrFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
'affylmGUIenvironment'
sample.size.evaluation : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation : common.sd: no visible binding for global
variable 'affylmGUIenvironment'
sample.size.evaluation : onCancel: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation1 : onCancel: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation1 : onOK: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation1 : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation1 : common.sd: no visible binding for global
variable 'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
'.affylmGUIglobals'
SetED: no visible binding for global variable '.affylmGUIglobals'
showDataset: no visible binding for global variable
'affylmGUIenvironment'
showTopTable: no visible binding for global variable
'affylmGUIenvironment'
showTopTable: no visible binding for global variable 'annlib'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : onOK: no visible binding for global variable
'affylmGUIenvironment'
siggenes : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
simFilter: no visible binding for global variable '.affylmGUIglobals'
simFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
spliceIndex: no visible binding for global variable
'affylmGUIenvironment'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable 'affylmGUIenvironment'
templA: no visible binding for global variable '.affylmGUIglobals'
templA : onCancel: no visible binding for global variable
'.affylmGUIglobals'
templA : onOK: no visible binding for global variable
'.affylmGUIglobals'
templA : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
trainTest: no visible binding for global variable
'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
'.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
'.affylmGUIglobals'
trainTest: possible error in Try(x = exprs(testAffyData)): unused
argument(s) (x = exprs(testAffyData))
trainTest : onOK: no visible binding for global variable
'affylmGUIenvironment'
updateLibs: no visible binding for global variable '.affylmGUIglobals'
updateLibs: no visible global function definition for
'biocinstallRepos'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : onCancel: no visible binding for global variable
'.affylmGUIglobals'
VennDiagram : onOK: no visible binding for global variable
'.affylmGUIglobals'
VennDiagram : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
VennDiagram: no visible binding for global variable
'affylmGUIenvironment'
VennDiagram : plotFunction: no visible binding for global variable
'include'
VennDiagram: no visible global function definition for 'tkrplot'
whichKindOfArray: no visible binding for global variable
'affylmGUIenvironment'
whichKindOfArray: no visible binding for '<<-' assignment to
'ReturnVal'
whichKindOfArray: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
whichKindOfArray : onOK: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray : onCancel: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable 'ReturnVal'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating oneChannelGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating oneChannelGUI-manual.tex ... OK
* checking oneChannelGUI-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/oneChannelGUI.Rcheck
---------- Making package oneChannelGUI ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package oneChannelGUI for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affylmGUI
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: DynDoc
Loading required package: GOstats
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: annotate
Loading required package: xtable
Attaching package: 'xtable'
The following object(s) are masked from package:widgetTools :
label
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'oneChannelGUI'
Formats: text html latex example chm
AptMidas text html latex chm
EG2probeset text html latex chm
GOenrichment text html latex chm
IPAlistFilter text html latex chm
ML.edesign text html latex chm
OpenBeadStudioFiles text html latex chm
OpenLargefiles text html latex chm
PlotOptionsv1 text html latex chm
VennDiagram text html latex chm
biomartFilter text html latex chm
buildingLocalAnnotation text html latex chm
colExtract text html latex chm
combineGeoMSF text html latex chm
consistentFilters text html latex chm
createGeoTarget text html latex chm
crosshybFilter text html latex chm
crosshybhuex.annotation text html latex chm
crosshybmoex.annotation text html latex chm
crosshybraex.annotation text html latex chm
dfMAplot text html latex chm
erankProdAltSpl text html latex chm
erankProdAltSplFilterl text html latex chm
exonsSpecific2as text html latex chm
extractAffyids text html latex chm
filteringTable text html latex chm
geneExonLibs text html latex chm
geoVSbioc text html latex chm
huex.annotation text html latex chm
hugene.annotation text html latex chm
inspecting.one.splice.index text html latex chm
inspecting.splice.index text html latex chm
intensityFilter text html latex chm
iqrFilter text html latex chm
listFilter text html latex chm
mapping2RefSeq text html latex chm
mapping2ensembl text html latex chm
mapping2exon text html latex chm
masigpro text html latex chm
masigpro.edesign text html latex chm
masigpro.view text html latex chm
metaArrayIC text html latex chm
metaArrayMerge text html latex chm
moex.annotation text html latex chm
mogene.annotation text html latex chm
myExpresso text html latex chm
normBoxplot text html latex chm
ocPlotHist text html latex chm
ocPlotPCA text html latex chm
oneChannelGUI-package text html latex example chm
oneChannelGUI text html latex example chm
plierToZero text html latex chm
plotGO text html latex chm
raex.annotation text html latex chm
ragene.annotation text html latex chm
rankProd text html latex chm
rawBoxplotPN text html latex chm
rawpCheck text html latex chm
refseqDownload text html latex chm
retrievePSRseq text html latex chm
reviqrFilter text html latex chm
sample.size.evaluation text html latex chm
sample.size.evaluation1 text html latex chm
showDataset text html latex chm
showTopTable text html latex chm
siggenes text html latex chm
simFilter text html latex chm
spliceIndex text html latex chm
targetWidget text html latex chm
templA text html latex chm
trainTest text html latex chm
updateLibs text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\oneChannelGUI.Rcheck\00_pkg_src\oneChannelGUI\chm\oneChannelGUI.chm
Compile time: 0 minutes, 1 second
72 Topics
194 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\oneChannelGUI.Rcheck\00_pkg_src\oneChannelGUI\chm\oneChannelGUI.chm, 67,044 bytes
Compression decreased file by 96,217 bytes.
adding MD5 sums
* DONE (oneChannelGUI)