made4 1.16.0
Aedin Culhane
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/made4 | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/made4.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable 'intensities'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating made4-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating made4-manual.tex ... OK
* checking made4-manual.tex using pdflatex ... OK
* Installing *source* package 'made4' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from package:base :
within
** help
>>> Building/Updating help pages for package 'made4'
Formats: text html latex example
NCI60 text html latex example
Note: removing empty section \references in file 'array2ade4.Rd'
array2ade4 text html latex example
bet.coinertia text html latex example
Note: removing empty section \value in file 'between.graph.Rd'
Note: removing empty section \note in file 'between.graph.Rd'
between.graph text html latex example
bga text html latex example
bga.jackknife text html latex example
bga.suppl text html latex example
Note: removing empty section \details in file 'checkfac.Rd'
Note: removing empty section \note in file 'checkfac.Rd'
Note: removing empty section \seealso in file 'checkfac.Rd'
Note: removing empty section \examples in file 'checkfac.Rd'
checkfac text html latex
Note: removing empty section \seealso in file 'chime3D.Rd'
Note: removing empty section \examples in file 'chime3D.Rd'
chime3D text html latex
Note: removing empty section \note in file 'cia.Rd'
cia text html latex example
Note: removing empty section \value in file 'commonMap.Rd'
Note: removing empty section \references in file 'commonMap.Rd'
commonMap text html latex example
comparelists text html latex example
Note: removing empty section \details in file 'do3d.Rd'
Note: removing empty section \note in file 'do3d.Rd'
Note: removing empty section \references in file 'do3d.Rd'
do3d text html latex example
Note: removing empty section \examples in file 'dudi.rwcoa.Rd'
dudi.rwcoa text html latex
Note: removing empty section \examples in file 'forrwcoa.Rd'
forrwcoa text html latex
Note: removing empty section \value in file 'genes.Rd'
Note: removing empty section \examples in file 'genes.Rd'
genes text html latex
Note: removing empty section \references in file 'genes1d.Rd'
genes1d text html latex example
getcol text html latex example
Note: removing empty section \examples in file 'getdata.Rd'
getdata text html latex
Note: removing empty section \value in file 'graph1D.Rd'
Note: removing empty section \details in file 'graph1D.Rd'
Note: removing empty section \note in file 'graph1D.Rd'
Note: removing empty section \references in file 'graph1D.Rd'
graph1D text html latex example
heatplot text html latex example
Note: removing empty section \seealso in file 'html3D.Rd'
html3D text html latex example
Note: removing empty section \seealso in file 'jmol3D.Rd'
Note: removing empty section \examples in file 'jmol3D.Rd'
jmol3D text html latex
khan text html latex example
Note: removing empty section \references in file 'ord.Rd'
ord text html latex example
Note: removing empty section \value in file 'overview.Rd'
Note: removing empty section \note in file 'overview.Rd'
Note: removing empty section \references in file 'overview.Rd'
overview text html latex example
plotarrays text html latex example
plotgenes text html latex example
Note: removing empty section \value in file 'pretty.dend.Rd'
Note: removing empty section \note in file 'pretty.dend.Rd'
Note: removing empty section \references in file 'pretty.dend.Rd'
pretty.dend text html latex example
randomiser text html latex example
s.var text html latex example
Note: removing empty section \note in file 'sumstats.Rd'
Note: removing empty section \references in file 'sumstats.Rd'
Note: removing empty section \seealso in file 'sumstats.Rd'
sumstats text html latex example
suppl text html latex example
Note: removing empty section \note in file 'topgenes.Rd'
Note: removing empty section \references in file 'topgenes.Rd'
topgenes text html latex example
** building package indices ...
* DONE (made4)