maDB 1.14.1
Johannes Rainer
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/maDB | | Last Changed Rev: 35895 / Revision: 38965 | | Last Changed Date: 2008-12-12 01:59:33 -0800 (Fri, 12 Dec 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/maDB.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'maDB/DESCRIPTION' ... OK
* this is package 'maDB' version '1.14.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maDB' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.calcRegulations: no visible binding for global variable 'con'
.calculateDBRegulations.old: no visible binding for global variable
'con'
.resetAfterError: no visible binding for global variable
'ConnectionForErrors'
dbGetGeneRegulationRanking: no visible global function definition for
'getDBAnnotation'
getAnnotation: possible error in dbGetAnnotation(con = con, id = id, v
= v, chip = chip, ...): unused argument(s) (con = con)
getAnnotation: possible error in getGene(mart = con, id = id, array =
.toMartChip(chip), ...): unused argument(s) (array =
.toMartChip(chip))
drawMA,exprSet: no visible binding for global variable 'main...'
loadFromDB,EexprSet: no visible binding for global variable 'con'
loadFromDB,MadbSet: no visible binding for global variable 'con'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating maDB-Ex.R ... OK
* checking examples ... OK
* creating maDB-manual.tex ... OK
* checking maDB-manual.tex using pdflatex ... OK
* Installing *source* package 'maDB' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: pgUtils
Loading required package: Rdbi
Loading required package: RdbiPgSQL
Loading required package: limma
Creating a new generic function for "sort" in "maDB"
** help
>>> Building/Updating help pages for package 'maDB'
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** building package indices ...
* DONE (maDB)