Package: maCorrPlot

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes maCorrPlot_1.12.0.tar.gz

StartedAt: 2009-04-18 17:45:04 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 17:45:26 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 21.9 seconds

RetCode: 0

Status: WARNINGS

CheckDir: maCorrPlot.Rcheck

Warnings: 1

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/maCorrPlot.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'maCorrPlot/DESCRIPTION' ... OK
* this is package 'maCorrPlot' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maCorrPlot' can be installed ... WARNING
Found the following significant warnings:
  WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  WARNING: found \itemize inside \value in file 'CutCI.Rd'
See '/Users/biocbuild/bbs-2.3-bioc/meat/maCorrPlot.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.corr.sample':
  plot.corr.sample

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating maCorrPlot-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maCorrPlot-manual.tex ... OK
* checking maCorrPlot-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-bioc/meat/maCorrPlot.Rcheck/00check.log
for details

* Installing *source* package 'maCorrPlot' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: lattice
** help
 >>> Building/Updating help pages for package 'maCorrPlot'
     Formats: text html latex example 
WARNING: found \itemize inside \value in file 'CorrSample.Rd'
  CorrSample                        text    html    latex   example
WARNING: found \itemize inside \value in file 'CutCI.Rd'
  CutCI                             text    html    latex   example
  oligodata                         text    html    latex   example
  plot.corr.sample                  text    html    latex   example
** building package indices ...
* DONE (maCorrPlot)