lumi 1.8.3
Pan Du
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/lumi | | Last Changed Rev: 35146 / Revision: 38965 | | Last Changed Date: 2008-11-07 07:52:42 -0800 (Fri, 07 Nov 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/lumi.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'lumi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lumi' version '1.8.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'lumi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating lumi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating lumi-manual.tex ... OK
* checking lumi-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/lumi.Rcheck
---------- Making package lumi ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package lumi for lazy loading
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: xtable
Loading required package: affy
Loading required package: mgcv
Loading required package: preprocessCore
Loading required package: RSQLite
Loading required package: DBI
Creating a new generic function for "density" in "lumi"
Creating a new generic function for "pairs" in "lumi"
Creating a new generic function for "plot" in "lumi"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'lumi'
Formats: text html latex example chm
Note: removing empty section \examples in file 'IlluminaID2nuID.Rd'
Note: removing empty section \examples in file 'IlluminaID2nuID.Rd'
IlluminaID2nuID text html latex chm
LumiBatch-class text html latex example chm
MAplot-methods text html latex example chm
Note: removing empty section \references in file 'addControlData2lumi.Rd'
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addControlData2lumi text html latex example chm
addNuID2lumi text html latex example chm
Note: removing empty section \references in file 'affyExpresso.Rd'
Note: removing empty section \examples in file 'affyExpresso.Rd'
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affyExpresso text html latex chm
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affyVstRma text html latex chm
bgAdjust text html latex example chm
boxplot-methods text html latex example chm
density-methods text html latex example chm
detectOutlier text html latex example chm
detectionCall text html latex example chm
estimateLumiCV text html latex example chm
example.lumi text html latex example chm
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getChipInfo text html latex example chm
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getControlData text html latex example chm
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getControlProbe text html latex example chm
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getControlType text html latex example chm
getNuIDMappingInfo text html latex example chm
hist-methods text html latex example chm
id2seq text html latex example chm
inverseVST text html latex example chm
is.nuID text html latex example chm
Note: removing empty section \seealso in file 'lumi.package.Rd'
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lumi.package text html latex chm
lumiB text html latex example chm
lumiExpresso text html latex example chm
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lumiN text html latex example chm
lumiQ text html latex example chm
lumiR text html latex example chm
lumiR.batch text html latex example chm
lumiT text html latex example chm
Note: removing empty section \examples in file 'monoSmu.Rd'
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monoSmu text html latex chm
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monoSpline text html latex chm
nuID2EntrezID text html latex example chm
nuID2IlluminaID text html latex example chm
nuID2RefSeqID text html latex example chm
nuID2probeID text html latex example chm
nuID2targetID text html latex example chm
pairs-methods text html latex example chm
plot-methods text html latex example chm
Note: removing empty section \references in file 'plotControlData.Rd'
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plotControlData text html latex example chm
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plotHousekeepingGene text html latex example chm
plotSampleRelation text html latex example chm
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plotStringencyGene text html latex example chm
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plotVST text html latex example chm
probeID2nuID text html latex example chm
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produceGEOSubmissionFile text html latex example chm
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rsn text html latex chm
seq2id text html latex example chm
Note: removing empty section \references in file 'ssn.Rd'
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Note: removing empty section \references in file 'ssn.Rd'
Note: removing empty section \examples in file 'ssn.Rd'
ssn text html latex chm
targetID2nuID text html latex example chm
vst text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\lumi.Rcheck\00_pkg_src\lumi\chm\lumi.chm
Compile time: 0 minutes, 1 second
55 Topics
299 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\lumi.Rcheck\00_pkg_src\lumi\chm\lumi.chm, 79,155 bytes
Compression decreased file by 126,534 bytes.
adding MD5 sums
* DONE (lumi)