limma 2.16.5
Gordon Smyth
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/limma | | Last Changed Rev: 38072 / Revision: 38965 | | Last Changed Date: 2009-03-19 16:00:17 -0700 (Thu, 19 Mar 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/limma.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'limma/DESCRIPTION' ... OK
* this is package 'limma' version '2.16.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'limma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating limma-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.3-bioc/meat/limma.Rcheck/tests'
Running 'limma-Tests.R'
Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...OK
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.3-bioc/meat/limma.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating limma-manual.tex ... OK
* checking limma-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/limma.Rcheck
---------- Making package limma ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making normexp.d from normexp.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c normexp.c -o normexp.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i limma_res.rc -o limma_res.o
gcc -std=gnu99 -shared -s -o limma.dll limma.def normexp.o limma_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package limma for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'limma'
Formats: text html latex example chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm
Compile time: 0 minutes, 1 second
124 Topics
656 Local links
24 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm, 215,352 bytes
Compression decreased file by 319,857 bytes.
adding MD5 sums
* DONE (limma)