iterativeBMAsurv 1.0.0
Ka Yee Yeung
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/iterativeBMAsurv | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/iterativeBMAsurv.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'iterativeBMAsurv/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iterativeBMAsurv' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iterativeBMAsurv' can be installed ... WARNING
Found the following significant warnings:
WARNING: \code inside code block in file 'iterateBMAsurv.train.Rd'
WARNING: \code inside code block in file 'iterateBMAsurv.train.wrapper.Rd'
WARNING: \code inside code block in file 'predictiveAssessCategory.Rd'
See '/Users/biocbuild/bbs-2.3-bioc/meat/iterativeBMAsurv.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating iterativeBMAsurv-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating iterativeBMAsurv-manual.tex ... OK
* checking iterativeBMAsurv-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.3-bioc/meat/iterativeBMAsurv.Rcheck/00check.log
for details
* Installing *source* package 'iterativeBMAsurv' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: BMA
Loading required package: survival
Loading required package: splines
Loading required package: leaps
** help
>>> Building/Updating help pages for package 'iterativeBMAsurv'
Formats: text html latex example
crossVal text html latex example
imageplot.iterate.bma.surv text html latex example
WARNING: \code inside code block in file 'iterateBMAsurv.train.Rd'
iterateBMAsurv.train text html latex example
iterateBMAsurv.train.predict.asse text html latex example
WARNING: \code inside code block in file 'iterateBMAsurv.train.wrapper.Rd'
iterateBMAsurv.train.wrapper text html latex example
iterativeBMAsurv-internal text html latex
iterativeBMAsurv-package text html latex example
Note: removing empty section \note in file 'predictBicSurv.Rd'
predictBicSurv text html latex example
Note: removing empty section \note in file 'predictiveAssessCategory.Rd'
WARNING: \code inside code block in file 'predictiveAssessCategory.Rd'
predictiveAssessCategory text html latex example
Note: removing empty section \note in file 'printTopGenes.Rd'
printTopGenes text html latex example
Note: removing empty section \note in file 'singleGeneCoxph.Rd'
singleGeneCoxph text html latex example
Note: removing empty section \details in file 'testCens.Rd'
testCens text html latex
testData text html latex
Note: removing empty section \details in file 'testSurv.Rd'
testSurv text html latex
Note: removing empty section \details in file 'trainCens.Rd'
trainCens text html latex
trainData text html latex
Note: removing empty section \details in file 'trainSurv.Rd'
trainSurv text html latex
** building package indices ...
* DONE (iterativeBMAsurv)