gaggle 1.10.0
Dan Tenenbaum
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/gaggle | | Last Changed Rev: 37396 / Revision: 38965 | | Last Changed Date: 2009-02-13 14:14:07 -0800 (Fri, 13 Feb 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/gaggle.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'gaggle/DESCRIPTION' ... OK
* this is package 'gaggle' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaggle' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.broadcastAssociativeArray: no visible binding for global variable
'goose'
.broadcastEnvironment: no visible binding for global variable 'goose'
.broadcastGraph: no visible binding for global variable 'goose'
broadcast: no visible binding for global variable 'goose'
connectToGaggle: no visible binding for global variable 'goose'
disconnectFromGaggle: no visible binding for global variable 'goose'
gaggleInit: no visible binding for '<<-' assignment to 'goose'
gaggleInit: no visible binding for '<<-' assignment to 'targetGoose'
gaggleInit: no visible binding for global variable 'goose'
geese: no visible binding for global variable 'goose'
getCluster: no visible binding for global variable 'goose'
getMatrix: no visible binding for global variable 'goose'
getNameList: no visible binding for global variable 'goose'
getNetwork: no visible binding for global variable 'goose'
getSpecies: no visible binding for global variable 'goose'
getTargetGoose: no visible binding for global variable 'goose'
getTuple: no visible binding for global variable 'goose'
hideGoose: no visible binding for global variable 'goose'
setSpecies: no visible binding for global variable 'goose'
setTargetGoose: no visible binding for '<<-' assignment to
'targetGoose'
setTargetGoose: no visible binding for global variable 'goose'
showGoose: no visible binding for global variable 'goose'
testGagglePackage: no visible global function definition for
'test.gaggle'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gaggle-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaggle-manual.tex ... OK
* checking gaggle-manual.tex using pdflatex ... OK
* Installing *source* package 'gaggle' ...
** R
** inst
** preparing package for lazy loading
Loading required package: rJava
Loading required package: graph
Loading required package: RUnit
** help
>>> Building/Updating help pages for package 'gaggle'
Formats: text html latex example
broadcast text html latex
Note: removing empty section \arguments in file 'connectToGaggle.Rd'
connectToGaggle text html latex
Note: removing empty section \arguments in file 'disconnectFromGaggle.Rd'
disconnectFromGaggle text html latex
gaggleInit text html latex
geese text html latex
Note: removing empty section \arguments in file 'getCluster.Rd'
getCluster text html latex
getMatrix text html latex
Note: removing empty section \arguments in file 'getNameList.Rd'
getNameList text html latex
getNetwork text html latex
getSpecies text html latex
getTargetGoose text html latex
Note: removing empty section \arguments in file 'getTuple.Rd'
getTuple text html latex
hideGoose text html latex
setSpecies text html latex
setTargetGoose text html latex
showGoose text html latex
testGagglePackage text html latex
** building package indices ...
* DONE (gaggle)