explorase 1.6.0
Michael Lawrence
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/explorase | | Last Changed Rev: 38883 / Revision: 38965 | | Last Changed Date: 2009-04-16 07:05:17 -0700 (Thu, 16 Apr 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/explorase.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'explorase/DESCRIPTION' ... OK
* this is package 'explorase' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'explorase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
exp_loadDesign: no visible global function definition for 'pData'
exp_loadExpressionSet: no visible global function definition for
'phenoData'
exp_loadExpressionSet: no visible global function definition for
'featureData'
exp_loadExpressionSet: no visible global function definition for
'exprs'
exp_loadInfo: no visible global function definition for 'pData'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating explorase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating explorase-manual.tex ... OK
* checking explorase-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/explorase.Rcheck
---------- Making package explorase ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package explorase for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'explorase'
Formats: text html latex example chm
Note: removing empty section \examples in file 'exp-addEntityType-vx.Rd'
Note: removing empty section \examples in file 'exp-addEntityType-vx.Rd'
exp-addEntityType-vx text html latex chm
Note: removing empty section \details in file 'exp-addFilterRule-rn.Rd'
Note: removing empty section \examples in file 'exp-addFilterRule-rn.Rd'
Note: removing empty section \details in file 'exp-addFilterRule-rn.Rd'
Note: removing empty section \examples in file 'exp-addFilterRule-rn.Rd'
exp-addFilterRule-rn text html latex chm
Note: removing empty section \details in file 'exp-calcAngleDist-31.Rd'
Note: removing empty section \examples in file 'exp-calcAngleDist-31.Rd'
Note: removing empty section \details in file 'exp-calcAngleDist-31.Rd'
Note: removing empty section \examples in file 'exp-calcAngleDist-31.Rd'
exp-calcAngleDist-31 text html latex chm
Note: removing empty section \details in file 'exp-calcCanberraDist.Rd'
Note: removing empty section \examples in file 'exp-calcCanberraDist.Rd'
Note: removing empty section \details in file 'exp-calcCanberraDist.Rd'
Note: removing empty section \examples in file 'exp-calcCanberraDist.Rd'
exp-calcCanberraDist text html latex chm
Note: removing empty section \details in file 'exp-calcCorrelationDist-45.Rd'
Note: removing empty section \examples in file 'exp-calcCorrelationDist-45.Rd'
Note: removing empty section \details in file 'exp-calcCorrelationDist-45.Rd'
Note: removing empty section \examples in file 'exp-calcCorrelationDist-45.Rd'
exp-calcCorrelationDist-45 text html latex chm
Note: removing empty section \details in file 'exp-calcDiff-y4.Rd'
Note: removing empty section \examples in file 'exp-calcDiff-y4.Rd'
Note: removing empty section \details in file 'exp-calcDiff-y4.Rd'
Note: removing empty section \examples in file 'exp-calcDiff-y4.Rd'
exp-calcDiff-y4 text html latex chm
Note: removing empty section \details in file 'exp-calcEuclideanDist-dn.Rd'
Note: removing empty section \examples in file 'exp-calcEuclideanDist-dn.Rd'
Note: removing empty section \details in file 'exp-calcEuclideanDist-dn.Rd'
Note: removing empty section \examples in file 'exp-calcEuclideanDist-dn.Rd'
exp-calcEuclideanDist-dn text html latex chm
Note: removing empty section \details in file 'exp-calcMahalanobisDist-r1.Rd'
Note: removing empty section \examples in file 'exp-calcMahalanobisDist-r1.Rd'
Note: removing empty section \details in file 'exp-calcMahalanobisDist-r1.Rd'
Note: removing empty section \examples in file 'exp-calcMahalanobisDist-r1.Rd'
exp-calcMahalanobisDist-r1 text html latex chm
Note: removing empty section \details in file 'exp-calcResiduals-ps.Rd'
Note: removing empty section \examples in file 'exp-calcResiduals-ps.Rd'
Note: removing empty section \details in file 'exp-calcResiduals-ps.Rd'
Note: removing empty section \examples in file 'exp-calcResiduals-ps.Rd'
exp-calcResiduals-ps text html latex chm
Note: removing empty section \details in file 'exp-calcZeroCorDist-by.Rd'
Note: removing empty section \examples in file 'exp-calcZeroCorDist-by.Rd'
Note: removing empty section \details in file 'exp-calcZeroCorDist-by.Rd'
Note: removing empty section \examples in file 'exp-calcZeroCorDist-by.Rd'
exp-calcZeroCorDist-by text html latex chm
exp-close text html latex chm
Note: removing empty section \details in file 'exp-colorEntities-1h.Rd'
Note: removing empty section \examples in file 'exp-colorEntities-1h.Rd'
Note: removing empty section \details in file 'exp-colorEntities-1h.Rd'
Note: removing empty section \examples in file 'exp-colorEntities-1h.Rd'
exp-colorEntities-1h text html latex chm
Note: removing empty section \examples in file 'exp-dataset-6l.Rd'
Note: removing empty section \examples in file 'exp-dataset-6l.Rd'
exp-dataset-6l text html latex chm
Note: removing empty section \details in file 'exp-designFactors-72.Rd'
Note: removing empty section \examples in file 'exp-designFactors-72.Rd'
Note: removing empty section \details in file 'exp-designFactors-72.Rd'
Note: removing empty section \examples in file 'exp-designFactors-72.Rd'
exp-designFactors-72 text html latex chm
Note: removing empty section \details in file 'exp-designFrame-d0.Rd'
Note: removing empty section \examples in file 'exp-designFrame-d0.Rd'
Note: removing empty section \details in file 'exp-designFrame-d0.Rd'
Note: removing empty section \examples in file 'exp-designFrame-d0.Rd'
exp-designFrame-d0 text html latex chm
Note: removing empty section \details in file 'exp-designSelection-5s.Rd'
Note: removing empty section \arguments in file 'exp-designSelection-5s.Rd'
Note: removing empty section \examples in file 'exp-designSelection-5s.Rd'
Note: removing empty section \details in file 'exp-designSelection-5s.Rd'
Note: removing empty section \arguments in file 'exp-designSelection-5s.Rd'
Note: removing empty section \examples in file 'exp-designSelection-5s.Rd'
exp-designSelection-5s text html latex chm
Note: removing empty section \details in file 'exp-entitiesInList-df.Rd'
Note: removing empty section \examples in file 'exp-entitiesInList-df.Rd'
Note: removing empty section \details in file 'exp-entitiesInList-df.Rd'
Note: removing empty section \examples in file 'exp-entitiesInList-df.Rd'
exp-entitiesInList-df text html latex chm
Note: removing empty section \details in file 'exp-entityFrame-4j.Rd'
Note: removing empty section \examples in file 'exp-entityFrame-4j.Rd'
Note: removing empty section \details in file 'exp-entityFrame-4j.Rd'
Note: removing empty section \examples in file 'exp-entityFrame-4j.Rd'
exp-entityFrame-4j text html latex chm
Note: removing empty section \details in file 'exp-entitySelection-11.Rd'
Note: removing empty section \examples in file 'exp-entitySelection-11.Rd'
Note: removing empty section \details in file 'exp-entitySelection-11.Rd'
Note: removing empty section \examples in file 'exp-entitySelection-11.Rd'
exp-entitySelection-11 text html latex chm
Note: removing empty section \details in file 'exp-entityType-69.Rd'
Note: removing empty section \arguments in file 'exp-entityType-69.Rd'
Note: removing empty section \examples in file 'exp-entityType-69.Rd'
Note: removing empty section \details in file 'exp-entityType-69.Rd'
Note: removing empty section \arguments in file 'exp-entityType-69.Rd'
Note: removing empty section \examples in file 'exp-entityType-69.Rd'
exp-entityType-69 text html latex chm
Note: removing empty section \details in file 'exp-entityTypes-9e.Rd'
Note: removing empty section \arguments in file 'exp-entityTypes-9e.Rd'
Note: removing empty section \examples in file 'exp-entityTypes-9e.Rd'
Note: removing empty section \details in file 'exp-entityTypes-9e.Rd'
Note: removing empty section \arguments in file 'exp-entityTypes-9e.Rd'
Note: removing empty section \examples in file 'exp-entityTypes-9e.Rd'
exp-entityTypes-9e text html latex chm
Note: removing empty section \details in file 'exp-filterRules-vt.Rd'
Note: removing empty section \examples in file 'exp-filterRules-vt.Rd'
Note: removing empty section \details in file 'exp-filterRules-vt.Rd'
Note: removing empty section \examples in file 'exp-filterRules-vt.Rd'
exp-filterRules-vt text html latex chm
Note: removing empty section \details in file 'exp-findPatterns-yw.Rd'
Note: removing empty section \examples in file 'exp-findPatterns-yw.Rd'
Note: removing empty section \details in file 'exp-findPatterns-yw.Rd'
Note: removing empty section \examples in file 'exp-findPatterns-yw.Rd'
exp-findPatterns-yw text html latex chm
Note: removing empty section \details in file 'exp-ggobi-69.Rd'
Note: removing empty section \arguments in file 'exp-ggobi-69.Rd'
Note: removing empty section \examples in file 'exp-ggobi-69.Rd'
Note: removing empty section \details in file 'exp-ggobi-69.Rd'
Note: removing empty section \arguments in file 'exp-ggobi-69.Rd'
Note: removing empty section \examples in file 'exp-ggobi-69.Rd'
exp-ggobi-69 text html latex chm
Note: removing empty section \details in file 'exp-isRunning-fo.Rd'
Note: removing empty section \arguments in file 'exp-isRunning-fo.Rd'
Note: removing empty section \examples in file 'exp-isRunning-fo.Rd'
Note: removing empty section \details in file 'exp-isRunning-fo.Rd'
Note: removing empty section \arguments in file 'exp-isRunning-fo.Rd'
Note: removing empty section \examples in file 'exp-isRunning-fo.Rd'
exp-isRunning-fo text html latex chm
Note: removing empty section \details in file 'exp-listFrame-gp.Rd'
Note: removing empty section \arguments in file 'exp-listFrame-gp.Rd'
Note: removing empty section \examples in file 'exp-listFrame-gp.Rd'
Note: removing empty section \details in file 'exp-listFrame-gp.Rd'
Note: removing empty section \arguments in file 'exp-listFrame-gp.Rd'
Note: removing empty section \examples in file 'exp-listFrame-gp.Rd'
exp-listFrame-gp text html latex chm
Note: removing empty section \details in file 'exp-listSelection.Rd'
Note: removing empty section \examples in file 'exp-listSelection.Rd'
Note: removing empty section \details in file 'exp-listSelection.Rd'
Note: removing empty section \examples in file 'exp-listSelection.Rd'
exp-listSelection text html latex chm
Note: removing empty section \examples in file 'exp-loadData-bo.Rd'
Note: removing empty section \examples in file 'exp-loadData-bo.Rd'
exp-loadData-bo text html latex chm
Note: removing empty section \details in file 'exp-loadDesign-35.Rd'
Note: removing empty section \examples in file 'exp-loadDesign-35.Rd'
Note: removing empty section \details in file 'exp-loadDesign-35.Rd'
Note: removing empty section \examples in file 'exp-loadDesign-35.Rd'
exp-loadDesign-35 text html latex chm
Note: removing empty section \examples in file 'exp-loadFiles-1w.Rd'
Note: removing empty section \examples in file 'exp-loadFiles-1w.Rd'
exp-loadFiles-1w text html latex chm
Note: removing empty section \examples in file 'exp-loadInfo-gk.Rd'
Note: removing empty section \examples in file 'exp-loadInfo-gk.Rd'
exp-loadInfo-gk text html latex chm
Note: removing empty section \examples in file 'exp-loadLists-pr.Rd'
Note: removing empty section \examples in file 'exp-loadLists-pr.Rd'
exp-loadLists-pr text html latex chm
Note: removing empty section \examples in file 'exp-loadProject-1g.Rd'
Note: removing empty section \examples in file 'exp-loadProject-1g.Rd'
exp-loadProject-1g text html latex chm
Note: removing empty section \details in file 'exp-newList-bs.Rd'
Note: removing empty section \examples in file 'exp-newList-bs.Rd'
Note: removing empty section \details in file 'exp-newList-bs.Rd'
Note: removing empty section \examples in file 'exp-newList-bs.Rd'
exp-newList-bs text html latex chm
Note: removing empty section \details in file 'exp-removeFilterRules-1i.Rd'
Note: removing empty section \examples in file 'exp-removeFilterRules-1i.Rd'
Note: removing empty section \details in file 'exp-removeFilterRules-1i.Rd'
Note: removing empty section \examples in file 'exp-removeFilterRules-1i.Rd'
exp-removeFilterRules-1i text html latex chm
Note: removing empty section \details in file 'exp-showClustering-b7.Rd'
Note: removing empty section \examples in file 'exp-showClustering-b7.Rd'
Note: removing empty section \details in file 'exp-showClustering-b7.Rd'
Note: removing empty section \examples in file 'exp-showClustering-b7.Rd'
exp-showClustering-b7 text html latex chm
Note: removing empty section \details in file 'exp-showPatterns-bh.Rd'
Note: removing empty section \examples in file 'exp-showPatterns-bh.Rd'
Note: removing empty section \details in file 'exp-showPatterns-bh.Rd'
Note: removing empty section \examples in file 'exp-showPatterns-bh.Rd'
exp-showPatterns-bh text html latex chm
Note: removing empty section \details in file 'exp-showResults-sk.Rd'
Note: removing empty section \examples in file 'exp-showResults-sk.Rd'
Note: removing empty section \details in file 'exp-showResults-sk.Rd'
Note: removing empty section \examples in file 'exp-showResults-sk.Rd'
exp-showResults-sk text html latex chm
Note: removing empty section \details in file 'exp-toggleFilterRules-ts.Rd'
Note: removing empty section \examples in file 'exp-toggleFilterRules-ts.Rd'
Note: removing empty section \details in file 'exp-toggleFilterRules-ts.Rd'
Note: removing empty section \examples in file 'exp-toggleFilterRules-ts.Rd'
exp-toggleFilterRules-ts text html latex chm
Note: removing empty section \examples in file 'exp_bioc.Rd'
Note: removing empty section \examples in file 'exp_bioc.Rd'
exp_bioc text html latex chm
explorase text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\explorase.Rcheck\00_pkg_src\explorase\chm\explorase.chm
Compile time: 0 minutes, 0 seconds
42 Topics
90 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\explorase.Rcheck\00_pkg_src\explorase\chm\explorase.chm, 34,734 bytes
Compression decreased file by 46,038 bytes.
adding MD5 sums
* DONE (explorase)