Package: domainsignatures

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes domainsignatures_1.2.0.tar.gz

StartedAt: 2009-04-18 17:18:21 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 17:19:51 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 89.5 seconds

RetCode: 0

Status: OK

CheckDir: domainsignatures.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/domainsignatures.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'domainsignatures/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'domainsignatures' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'domainsignatures' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating domainsignatures-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating domainsignatures-manual.tex ... OK
* checking domainsignatures-manual.tex using pdflatex ... OK

* Installing *source* package 'domainsignatures' ...
** R
** inst
** preparing package for lazy loading
Loading required package: KEGG.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: prada
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: biomaRt
** help
 >>> Building/Updating help pages for package 'domainsignatures'
     Formats: text html latex example 
  dataSource                        text    html    latex   example
  domainsignatures-package          text    html    latex
  getKEGGdata                       text    html    latex   example
  getKEGGdescription                text    html    latex   example
  gseDomain                         text    html    latex   example
  ipDataSource-class                text    html    latex
** building package indices ...
* DONE (domainsignatures)