cosmoGUI 1.8.0
Oliver Bembom
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/cosmoGUI | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/cosmoGUI.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'cosmoGUI/DESCRIPTION' ... OK
* this is package 'cosmoGUI' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cosmoGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
advanced: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
advancedBuild: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for global variable
'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
mysample: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
sampleA: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
sampleICBound: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
sampleICStep: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
sampleV: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
subMotif: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating cosmoGUI-Ex.R ... OK
* checking examples ... OK
* creating cosmoGUI-manual.tex ... OK
* checking cosmoGUI-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/cosmoGUI.Rcheck
---------- Making package cosmoGUI ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
preparing package cosmoGUI for lazy loading
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DynDoc
Loading required package: cosmo
Loading required package: seqLogo
Loading required package: grid
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'cosmoGUI'
Formats: text html latex example chm
Note: removing empty section \seealso in file 'constraintBuilder.Rd'
Note: removing empty section \seealso in file 'constraintBuilder.Rd'
constraintBuilder text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\cosmoGUI.Rcheck\00_pkg_src\cosmoGUI\chm\cosmoGUI.chm
Compile time: 0 minutes, 0 seconds
2 Topics
2 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\cosmoGUI.Rcheck\00_pkg_src\cosmoGUI\chm\cosmoGUI.chm, 16,675 bytes
Compression increased file by 9,081 bytes.
adding MD5 sums
* DONE (cosmoGUI)