cellHTS2 2.6.0
Florian Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/cellHTS2 | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/cellHTS2.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... WARNING
Found the following significant warnings:
WARNING: found \itemize inside \value in file 'configure.Rd'
WARNING: found \itemize inside \value in file 'configure.Rd'
See 'E:/biocbld/bbs-2.3-bioc/meat/cellHTS2.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Data<-,cellHTS-array: no visible global function definition for
'channelNames<-'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating cellHTS2-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating cellHTS2-manual.tex ... OK
* checking cellHTS2-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.3-bioc/meat/cellHTS2.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/cellHTS2.Rcheck
---------- Making package cellHTS2 ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package cellHTS2 for lazy loading
Loading required package: prada
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Attaching package: 'survival'
The following object(s) are masked from package:robustbase :
heart
Loading required package: splots
Loading required package: vsn
Loading required package: lattice
Loading required package: affy
Loading required package: limma
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'cellHTS2'
Formats: text html latex example chm
Bscore text html latex example chm
Data text html latex chm
ROC-class text html latex example chm
ROC text html latex example chm
annotate text html latex example chm
batch text html latex chm
bdgpbiomart text html latex example chm
cellHTS-class text html latex example chm
cellHTS2 text html latex chm
configurationAsScreenPlot text html latex example chm
WARNING: found \itemize inside \value in file 'configure.Rd'
WARNING: found \itemize inside \value in file 'configure.Rd'
configure text html latex example chm
convertOldCellHTS text html latex example chm
convertWellCoordinates text html latex example chm
data-KcViab text html latex example chm
data-KcViabSmall text html latex example chm
data-dualCh text html latex example chm
data-oldKcViabSmall text html latex example chm
getDynamicRange text html latex example chm
getEnVisionRawData text html latex example chm
getMeasureRepAgreement text html latex example chm
getTopTable text html latex example chm
getZfactor text html latex example chm
imageScreen text html latex example chm
intensityFiles text html latex chm
normalizePlates text html latex example chm
Note: removing empty section \details in file 'oneRowPerId.Rd'
Note: removing empty section \details in file 'oneRowPerId.Rd'
oneRowPerId text html latex example chm
plate text html latex chm
plateEffects text html latex chm
plotSpatialEffects text html latex example chm
readHTAnalystData text html latex example chm
readPlateList text html latex example chm
scoreReplicates text html latex example chm
scores2calls text html latex example chm
Note: removing empty section \references in file 'spatialNormalization.Rd'
Note: removing empty section \references in file 'spatialNormalization.Rd'
spatialNormalization text html latex example chm
state text html latex chm
summarizeChannels text html latex example chm
summarizeReplicates text html latex example chm
templateDescriptionFile text html latex example chm
wellAnno text html latex chm
write.tabdel text html latex example chm
writeReport text html latex example chm
writeTab text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\cellHTS2.Rcheck\00_pkg_src\cellHTS2\chm\cellHTS2.chm
Compile time: 0 minutes, 13 seconds
43 Topics
456 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\cellHTS2.Rcheck\00_pkg_src\cellHTS2\chm\cellHTS2.chm, 103,011 bytes
Compression decreased file by 148,587 bytes.
adding MD5 sums
* DONE (cellHTS2)