Package: biocGraph

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes biocGraph_1.4.0.tar.gz

StartedAt: 2009-04-18 16:31:23 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 16:32:53 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 90.3 seconds

RetCode: 0

Status: OK

CheckDir: biocGraph.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/biocGraph.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'biocGraph/DESCRIPTION' ... OK
* this is package 'biocGraph' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biocGraph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating biocGraph-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biocGraph-manual.tex ... OK
* checking biocGraph-manual.tex using pdflatex ... OK

* Installing *source* package 'biocGraph' ...
** R
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: geneplotter
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: Rgraphviz
Loading required package: grid

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: fibroEset
Loading required package: hgu95av2.db
Loading required package: DBI
** help
 >>> Building/Updating help pages for package 'biocGraph'
     Formats: text html latex example 
  imageMap                          text    html    latex   example
** building package indices ...
* DONE (biocGraph)